JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRM2_chr3_51702068_51723613	0/0	t0003	738	4	0	4	0	0	0	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	t0004	738	1	0	0	1	0	0	copy fasta	GRM2	chr3	51702068	51723613
GRM3_chr7_86638909_86869879	1/0	t0001	1629	130	44	24	48	5	8	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	t0002	1628	24	17	3	1	1	2	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	t0003	1617	21	0	3	17	0	1	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	t0004	1629	9	8	1	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	t0005	1629	7	7	0	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	t0006	1628	4	4	0	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	t0007	1629	4	0	0	3	0	1	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	t0008	1628	3	3	0	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	t0009	1629	3	0	0	3	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/1	t0010	1629	2	0	1	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	t0011	1628	2	2	0	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	t0012	1628	2	1	1	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	t0013	1629	1	1	0	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	t0014	1629	1	1	0	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	t0015	1618	1	0	0	1	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	t0016	1629	1	0	0	1	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	t0017	1628	1	0	1	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM4_chr6_34013643_34151087	0/0	t0001	4630	73	18	20	20	3	12	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	1/0	t0002	4630	52	4	16	24	4	3	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0003	4630	50	2	12	24	0	12	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/1	t0004	4630	23	17	3	2	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0005	4630	11	10	1	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0006	4630	10	0	1	9	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0007	4630	9	7	2	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0008	4630	6	0	0	6	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0009	4630	5	5	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0010	4622	4	4	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0011	4630	4	4	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0012	4630	3	0	0	3	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0013	4630	2	0	0	2	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0014	4630	2	2	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0015	4630	2	0	0	2	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0016	4630	2	0	0	2	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0017	4630	2	0	2	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0018	4630	2	2	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0019	4630	2	0	0	2	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0020	4630	2	2	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0021	4630	1	0	1	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0022	4630	1	0	1	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0023	4630	1	0	0	0	0	1	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0024	4630	1	0	0	0	1	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0025	4630	1	0	0	1	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0026	4630	1	1	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0027	4630	1	0	0	0	0	1	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0028	4622	1	1	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0029	4630	1	0	1	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0030	4622	1	1	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0031	4630	1	1	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087