JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRM4_chr6_34013643_34151087	0/0	t0032	4630	1	1	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0033	4630	1	0	0	0	0	1	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0034	4630	1	1	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0035	4630	1	0	0	1	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	t0036	4622	1	1	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM5_chr11_88499642_89070982	1/1	t0001	4358	42	16	8	15	0	1	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0002	4358	37	10	10	13	2	2	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0003	4358	33	19	3	11	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0004	4358	17	11	3	2	0	1	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0005	4358	13	0	0	12	0	1	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0006	4674	4	2	2	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0007	4675	3	3	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0008	4669	2	2	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0009	4358	2	2	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0010	4669	2	2	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0011	4358	1	0	0	1	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0012	4358	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0013	4358	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0014	4358	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0015	4358	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0016	4358	1	0	1	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0017	4674	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0018	4358	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0019	4358	1	0	0	0	0	1	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0020	4358	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0021	4358	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0022	4358	1	0	0	1	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0023	4358	1	0	1	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0024	4358	1	0	0	1	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0025	4358	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0026	4358	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0027	4669	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0028	4673	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0029	4674	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0030	4358	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0031	4358	1	0	0	1	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0032	4358	1	0	1	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0033	4358	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0034	4358	1	0	1	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0035	4358	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0036	4358	1	0	0	1	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0037	4358	1	0	0	1	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0038	4358	1	0	0	1	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	t0039	4358	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM6_chr5_178973327_179000320	0/0	t0001	3392	147	21	46	59	8	13	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0002	3392	73	0	3	61	0	9	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/1	t0003	3392	59	24	6	19	5	4	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0004	3392	49	6	17	18	4	4	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0005	3392	38	15	4	7	1	11	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0006	3392	31	0	4	27	0	0	copy fasta	GRM6	chr5	178973327	179000320