JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRM6_chr5_178973327_179000320	0/0	t0007	3392	11	10	1	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0008	3392	6	0	0	6	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0009	3390	5	5	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0010	3392	4	0	0	0	0	4	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	1/0	t0011	3392	4	3	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0012	3392	4	0	0	4	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0013	3392	4	0	0	4	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0014	3392	3	3	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0015	3392	2	2	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0016	3392	2	2	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0017	3392	2	0	2	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0018	3392	2	0	2	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0019	3392	2	2	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0020	3392	2	0	0	0	0	2	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0021	3392	2	0	0	2	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0022	3392	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0023	3392	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0024	3392	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0025	3392	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0026	3393	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0027	3393	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0028	3392	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0029	3392	1	0	1	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0030	3392	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0031	3392	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0032	3392	1	0	0	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0033	3392	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0034	3392	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0035	3392	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0036	3392	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	t0037	3392	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM7_chr3_6856115_7746533	0/0	t0001	1402	35	13	12	2	2	6	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	t0002	1402	18	16	1	0	0	1	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	t0003	1401	12	9	3	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	t0004	1403	6	6	0	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	t0005	1402	3	3	0	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	t0006	1402	2	2	0	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	t0007	1402	2	0	1	0	0	1	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	t0008	1402	1	0	1	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	t0009	1402	1	1	0	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM8_chr7_126433598_127257941	0/0	t0001	978	67	37	10	7	1	12	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	t0002	977	32	12	11	3	2	4	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	t0003	978	2	0	1	0	1	0	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	t0004	978	2	2	0	0	0	0	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	t0005	977	2	2	0	0	0	0	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	t0006	977	1	1	0	0	0	0	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	t0007	978	1	0	0	0	0	1	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	t0008	977	1	0	0	0	0	1	copy fasta	GRM8	chr7	126433598	127257941
GRN_chr17_44340302_44358106	1/0	t0001	349	281	23	69	146	9	33	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/1	t0002	349	164	66	13	62	7	15	copy fasta	GRN	chr17	44340302	44358106