Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AMN1_chr12_31666142_31734021	0/0	t0011	1176	1	1	0	0	0	0	copy fasta	AMN1	chr12	31666142	31734021
AMN1_chr12_31666142_31734021	0/0	t0012	1176	1	0	0	1	0	0	copy fasta	AMN1	chr12	31666142	31734021
AMN_chr14_102917663_102935842	0/0	t0001	189	226	23	36	134	4	29	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	t0002	189	94	29	27	22	7	9	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	1/0	t0003	189	89	21	10	46	4	7	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/1	t0004	189	29	16	5	1	3	3	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	t0005	189	3	3	0	0	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	t0006	189	3	0	3	0	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	t0007	189	3	3	0	0	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	t0008	189	1	1	0	0	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	t0009	189	1	1	0	0	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	t0010	211	1	0	0	1	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	t0011	189	1	1	0	0	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	t0012	189	1	0	1	0	0	0	copy fasta	AMN	chr14	102917663	102935842
AMOTL1_chr11_94763356_94881748	1/0	t0001	6110	71	19	13	27	5	6	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0002	6118	34	0	4	27	0	3	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0003	6114	13	8	1	3	0	1	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0004	6112	12	4	1	6	0	1	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/1	t0005	6110	9	1	4	0	1	2	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0006	6116	8	0	2	5	0	1	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0007	6116	6	0	3	0	0	3	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0008	6120	6	0	4	2	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0009	6107	5	5	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0010	6108	5	1	1	3	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0011	6111	5	5	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0012	6104	4	0	0	4	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0013	6099	4	3	1	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0014	6122	4	0	2	2	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0015	6103	3	3	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0016	6120	3	3	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0017	6101	3	2	1	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0018	6116	3	0	3	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0019	6101	3	0	0	3	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0020	6103	2	2	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0021	6122	2	1	0	0	0	1	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0022	6116	2	2	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0023	6110	2	2	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0024	6106	2	0	0	2	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0025	6110	2	0	0	2	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0026	6113	2	2	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0027	6103	2	2	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0028	6109	2	2	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0029	6110	2	0	0	2	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0030	6118	1	0	1	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0031	6116	1	0	0	0	0	1	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0032	6103	1	0	1	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0033	6101	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0034	6101	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0035	6104	1	0	0	1	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0036	6104	1	0	0	0	0	1	copy fasta	AMOTL1	chr11	94763356	94881748