JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRN_chr17_44340302_44358106	0/0	t0003	349	4	4	0	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	t0004	349	2	2	0	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	t0005	349	1	1	0	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRPEL1_chr4_7053895_7073064	0/1	t0001	2000	226	33	49	103	11	29	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0002	2000	113	21	19	64	5	4	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0003	2000	17	0	7	9	0	1	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0004	2000	10	10	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0005	2000	6	6	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0006	2000	5	0	0	0	0	5	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0007	1998	5	5	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0008	2000	3	2	1	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0009	2000	3	3	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0010	2000	3	1	0	0	0	2	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0011	2000	2	0	2	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0012	2000	2	0	0	2	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0013	2000	2	0	2	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0014	2000	2	2	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0015	2000	2	0	0	2	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0016	2000	1	1	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0017	2000	1	1	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0018	2000	1	1	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0019	2000	1	1	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0020	2000	1	1	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0021	2000	1	1	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0022	2000	1	1	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	1/0	t0023	2000	1	0	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0024	2000	1	0	0	1	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0025	2000	1	1	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0026	2000	1	1	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0027	2000	1	1	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0028	2000	1	1	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0029	2000	1	0	0	0	0	1	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0030	2000	1	0	0	1	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0031	2000	1	1	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	t0032	2000	1	1	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL2_chr5_149340499_149359583	1/1	t0001	3343	178	19	35	98	5	19	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0002	3343	88	39	12	23	4	10	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0003	3343	27	0	4	14	1	8	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0004	3342	26	0	7	17	2	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0005	3336	17	2	1	12	0	2	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0006	3348	7	5	2	0	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0007	3336	7	6	1	0	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0008	3344	6	1	1	0	3	1	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0009	3343	6	5	1	0	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0010	3343	3	1	1	0	1	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0011	3343	2	2	0	0	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0012	3343	2	2	0	0	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0013	3343	2	2	0	0	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0014	3348	1	1	0	0	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0015	3343	1	1	0	0	0	0	copy fasta	GRPEL2	chr5	149340499	149359583