JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRPEL2_chr5_149340499_149359583	0/0	t0016	3335	1	0	0	0	0	1	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0017	3343	1	0	0	0	0	1	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0018	3343	1	0	0	1	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0019	3343	1	0	0	1	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0020	3348	1	1	0	0	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0021	3343	1	1	0	0	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0022	3329	1	1	0	0	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0023	3336	1	0	0	1	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0024	3343	1	0	0	1	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0025	3343	1	0	0	1	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0026	3342	1	0	0	1	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0027	3343	1	0	1	0	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	t0028	3343	1	1	0	0	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPR_chrX_16118565_16158518	0/0	t0001	1262	91	12	16	51	0	12	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	1/0	t0002	1263	55	8	13	24	3	6	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/1	t0003	1262	33	3	13	8	3	5	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0004	1262	26	0	2	23	0	1	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0005	1262	13	13	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0006	1262	11	9	2	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0007	1263	11	0	1	10	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0008	1263	9	8	1	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0009	1262	6	2	4	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0010	1262	4	4	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0011	1262	3	0	2	0	1	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0012	1263	3	1	2	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0013	1262	2	2	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0014	1263	2	2	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0015	1263	2	2	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0016	1256	2	0	0	2	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0017	1263	2	2	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0018	1262	1	1	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0019	1263	1	1	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0020	1262	1	1	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0021	1254	1	1	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0022	1262	1	0	0	1	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0023	1263	1	0	0	1	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0024	1263	1	1	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	t0025	1263	1	1	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRP_chr18_59215158_59235771	1/1	t0001	412	397	86	74	176	16	43	copy fasta	GRP	chr18	59215158	59235771
GRP_chr18_59215158_59235771	0/0	t0002	412	10	8	2	0	0	0	copy fasta	GRP	chr18	59215158	59235771
GRP_chr18_59215158_59235771	0/0	t0003	412	1	0	0	0	0	1	copy fasta	GRP	chr18	59215158	59235771
GRSF1_chr4_70810783_70844890	0/1	t0001	5167	168	31	43	65	7	21	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0002	5168	43	1	4	36	0	2	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0003	5168	15	15	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0004	5168	12	2	1	5	0	4	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0005	5167	12	0	0	12	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0006	5169	11	8	0	0	0	3	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0007	5167	10	0	1	6	0	3	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0008	5167	6	0	0	6	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0009	5168	6	6	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890