JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRSF1_chr4_70810783_70844890	0/0	t0010	5168	3	3	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0011	5169	3	3	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0012	5168	3	0	0	0	3	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0013	5167	2	2	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0014	5168	2	2	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0015	5162	2	1	1	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0016	5169	2	2	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0017	5168	1	1	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0018	5167	1	0	0	1	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0019	5168	1	0	0	1	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0020	5167	1	1	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0021	5167	1	1	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0022	5168	1	0	0	1	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0023	5167	1	0	1	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0024	5167	1	0	0	1	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0025	5167	1	0	1	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0026	5169	1	0	0	1	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0027	5167	1	0	0	1	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0028	5167	1	1	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0029	5167	1	0	1	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0030	5168	1	1	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0031	5168	1	0	0	0	0	1	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0032	5167	1	0	0	0	0	1	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0033	5168	1	1	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0034	5167	1	0	0	1	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0035	5167	1	0	0	0	0	1	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0036	5167	1	0	0	1	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0037	5167	1	0	1	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0038	5162	1	1	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0039	5164	1	1	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0040	5169	1	1	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	1/0	t0041	5168	1	0	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0042	5168	1	1	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0043	5168	1	1	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	t0044	5168	1	1	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRTP1_chr13_113319163_113369130	1/1	t0001	405	226	34	58	82	14	36	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	t0002	408	27	14	3	10	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	t0003	405	24	21	2	1	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	t0004	406	6	4	2	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	t0005	406	2	1	1	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	t0006	405	1	1	0	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	t0007	406	1	1	0	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	t0008	408	1	0	0	1	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRWD1_chr19_48440983_48462022	0/0	t0001	4021	157	32	46	51	5	23	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	1/0	t0002	4021	111	4	5	90	2	9	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0003	4021	31	5	3	19	1	3	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0004	4020	10	10	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0005	4020	8	8	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0006	4022	7	0	1	2	0	4	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0007	4020	7	0	0	7	0	0	copy fasta	GRWD1	chr19	48440983	48462022