JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRWD1_chr19_48440983_48462022	0/0	t0008	4020	6	1	4	0	0	1	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0009	4020	6	0	0	2	0	4	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0010	4021	6	0	6	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0011	4020	6	2	0	4	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0012	4021	6	0	0	6	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0013	4021	5	4	1	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0014	4021	5	0	0	5	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0015	4020	4	2	2	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0016	4020	4	2	2	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0017	4021	3	3	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0018	4020	3	3	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0019	4021	3	0	0	3	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0020	4021	3	3	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0021	4021	2	0	0	2	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0022	4021	2	0	0	2	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0023	4021	2	0	0	2	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0024	4021	2	0	2	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0025	4021	2	0	0	0	0	2	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0026	4020	2	1	1	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0027	4021	2	0	0	2	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0028	4020	2	2	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0029	4020	2	1	1	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0030	4020	2	2	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0031	4021	1	0	1	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0032	4021	1	1	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0033	4020	1	1	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0034	4021	1	0	1	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0035	4020	1	1	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0036	4020	1	1	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0037	4020	1	1	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/1	t0038	4021	1	0	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0039	4021	1	1	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0040	4020	1	0	0	1	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0041	4020	1	1	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0042	4021	1	0	1	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0043	4021	1	0	0	1	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0044	4021	1	0	1	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0045	4020	1	1	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0046	4021	1	0	0	1	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0047	4021	1	0	0	1	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0048	4020	1	1	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0049	4022	1	0	0	1	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0050	4339	1	0	0	0	0	1	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0051	4020	1	0	0	1	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0052	4020	1	0	0	0	0	1	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	t0053	4020	1	0	0	1	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRXCR1_chr4_42887713_43035658	0/0	t0001	673	153	22	22	88	6	15	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	1/1	t0002	673	98	43	21	21	2	9	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/0	t0003	673	39	8	4	25	0	2	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/0	t0004	673	39	12	14	11	2	0	copy fasta	GRXCR1	chr4	42887713	43035658