JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRXCR1_chr4_42887713_43035658	0/0	t0005	673	2	2	0	0	0	0	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/0	t0006	673	2	2	0	0	0	0	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/0	t0007	673	1	0	1	0	0	0	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/0	t0008	673	1	1	0	0	0	0	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/0	t0009	673	1	0	0	1	0	0	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/0	t0010	673	1	0	0	0	0	1	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/0	t0011	673	1	0	0	0	0	1	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR2_chr5_145853521_145878014	0/0	t0001	1259	130	31	11	71	3	14	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/1	t0002	1259	97	11	28	38	2	17	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0003	1259	60	23	6	24	1	6	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0004	1259	47	7	9	24	6	1	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0005	1259	35	4	11	18	0	2	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	1/0	t0006	1259	13	1	4	2	2	3	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0007	1259	12	4	1	7	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0008	1259	10	1	2	6	0	1	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0009	1259	9	0	0	9	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0010	1259	6	0	2	3	0	1	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0011	1259	5	0	3	0	2	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0012	1259	4	0	2	0	2	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0013	1259	4	4	0	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0014	1259	3	0	0	3	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0015	1259	3	0	1	1	0	1	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0016	1259	3	3	0	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0017	1259	3	3	0	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0018	1259	2	0	2	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0019	1259	2	0	0	2	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0020	1259	2	2	0	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0021	1259	2	1	0	1	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0022	1259	2	2	0	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0023	1259	2	0	0	2	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0024	1259	1	0	0	0	0	1	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0025	1259	1	0	1	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0026	1259	1	0	0	1	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0027	1259	1	0	1	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0028	1259	1	0	0	1	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0029	1259	1	0	0	1	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0030	1259	1	0	0	1	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0031	1259	1	0	1	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0032	1259	1	0	0	0	0	1	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0033	1259	1	1	0	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0034	1259	1	1	0	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0035	1259	1	0	1	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0036	1259	1	1	0	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	t0037	1259	1	0	0	1	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GSAP_chr7_77305751_77421349	1/1	t0001	636	280	40	54	140	15	29	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	t0002	636	48	37	6	0	3	2	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	t0003	632	21	2	3	13	0	3	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	t0004	636	1	0	1	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	t0005	636	1	1	0	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	t0006	636	1	0	0	1	0	0	copy fasta	GSAP	chr7	77305751	77421349