JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GSC2_chr22_19141993_19155292	1/0	t0001	2008	229	43	66	82	12	25	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0002	2008	151	35	15	91	3	7	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0003	2008	26	0	3	14	1	8	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/1	t0004	2008	21	2	0	16	0	2	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0005	2008	7	7	0	0	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0006	2008	7	0	0	6	0	1	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0007	2008	4	2	2	0	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0008	2008	4	0	0	0	2	2	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0009	2008	2	0	0	2	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0010	2008	2	1	0	1	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0011	2008	2	2	0	0	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0012	2008	2	2	0	0	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0013	2008	1	0	0	0	0	1	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0014	2008	1	1	0	0	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0015	2008	1	0	1	0	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0016	2008	1	1	0	0	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0017	2008	1	1	0	0	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0018	2008	1	0	0	1	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0019	2008	1	1	0	0	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0020	2008	1	0	0	0	0	1	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0021	2008	1	0	0	1	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0022	2008	1	0	1	0	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0023	2008	1	0	0	0	0	1	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0024	2008	1	1	0	0	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	t0025	2008	1	1	0	0	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC_chr14_94763223_94775113	1/1	t0001	367	433	84	80	206	17	44	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	t0002	368	14	10	3	0	1	0	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	t0003	367	2	0	2	0	0	0	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	t0004	367	2	0	0	2	0	0	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	t0005	367	1	0	1	0	0	0	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	t0006	367	1	1	0	0	0	0	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	t0007	367	1	1	0	0	0	0	copy fasta	GSC	chr14	94763223	94775113
GSDMA_chr17_39958004_39982768	0/1	t0001	797	174	25	35	91	8	14	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0002	792	123	10	32	52	5	24	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	1/0	t0003	798	61	17	6	25	3	9	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0004	793	16	0	0	16	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0005	798	15	14	1	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0006	799	9	9	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0007	796	7	2	0	4	0	1	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0008	796	6	6	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0009	798	4	4	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0010	798	4	0	2	2	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0011	798	2	0	0	2	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0012	798	2	1	1	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0013	792	2	2	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0014	798	2	2	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0015	797	1	1	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0016	799	1	0	0	1	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0017	792	1	0	0	1	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0018	791	1	0	0	1	0	0	copy fasta	GSDMA	chr17	39958004	39982768