JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GSDMA_chr17_39958004_39982768	0/0	t0019	797	1	1	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0020	795	1	1	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0021	799	1	0	0	1	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0022	798	1	1	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0023	799	1	1	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0024	792	1	1	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	t0025	798	1	0	1	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMB_chr17_39899595_39923635	1/1	t0001	334	386	76	75	180	16	37	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	t0002	334	11	11	0	0	0	0	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	t0003	334	1	0	0	0	0	1	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	t0004	334	1	0	1	0	0	0	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	t0005	334	1	1	0	0	0	0	copy fasta	GSDMB	chr17	39899595	39923635
GSDMC_chr8_129743196_129791624	1/1	t0001	924	279	58	54	131	15	19	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	t0002	924	70	12	6	40	0	12	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	t0003	924	44	5	5	29	1	4	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	t0004	925	6	4	2	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	t0005	925	4	3	0	1	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	t0006	924	3	3	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	t0007	924	2	1	1	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	t0008	924	2	1	1	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	t0009	924	1	0	1	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	t0010	924	1	0	0	1	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	t0011	924	1	0	0	1	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	t0012	955	1	0	0	1	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	t0013	924	1	0	0	0	0	1	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	t0014	925	1	1	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMD_chr8_143553346_143568062	0/1	t0001	269	407	83	84	181	18	40	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	t0002	269	8	8	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	t0003	269	1	0	0	1	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	t0004	269	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDME_chr7_24693355_24762464	1/1	t0001	760	267	31	49	137	17	31	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	t0002	759	63	16	3	44	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	t0003	760	34	16	6	4	1	7	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	t0004	760	11	10	1	0	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	t0005	760	8	5	3	0	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	t0006	760	7	7	0	0	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	t0007	760	6	4	2	0	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	t0008	760	4	0	0	4	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	t0009	760	3	3	0	0	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	t0010	759	2	2	0	0	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	t0011	760	1	0	0	1	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	t0012	760	1	0	0	1	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	t0013	760	1	1	0	0	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	t0014	760	1	0	0	1	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	t0015	759	1	1	0	0	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSE1_chr16_85608322_85681200	1/0	t0001	3732	65	31	14	8	4	7	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0002	3732	56	0	15	27	1	13	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0003	3728	26	3	7	11	1	4	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0004	3736	19	4	1	9	0	5	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/1	t0005	3732	12	1	5	0	2	3	copy fasta	GSE1	chr16	85608322	85681200