JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GSE1_chr16_85608322_85681200	0/0	t0006	3732	9	9	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0007	3736	8	2	5	0	0	1	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0008	3734	7	0	3	0	0	4	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0009	3733	7	0	1	1	1	4	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0010	3735	5	5	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0011	3728	3	0	2	0	1	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0012	3736	3	3	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0013	3718	3	2	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0014	3733	3	0	2	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0015	3728	2	0	0	0	0	2	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0016	3728	2	0	2	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0017	3737	2	2	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0018	3729	2	2	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0019	3716	2	2	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0020	3719	2	2	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0021	3733	2	1	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0022	3732	2	0	0	2	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0023	3734	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0024	3732	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0025	3734	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0026	3732	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0027	3728	1	0	0	0	1	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0028	3729	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0029	3729	1	0	0	0	0	1	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0030	3728	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0031	3732	1	0	0	0	1	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0032	3734	1	0	0	0	0	1	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0033	3737	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0034	3733	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0035	3737	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0036	3732	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0037	3736	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0038	3736	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0039	3732	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0040	3736	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0041	3736	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0042	3736	1	0	0	0	0	1	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0043	3710	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0044	3734	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0045	3734	1	0	0	0	0	1	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0046	3734	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0047	3734	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0048	3727	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0049	3717	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0050	3718	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0051	3732	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0052	3726	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0053	3732	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0054	3733	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0055	3733	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200