JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GSE1_chr16_85608322_85681200	0/0	t0056	3732	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0057	3732	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0058	3732	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0059	3732	1	0	0	0	0	1	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0060	3732	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0061	3732	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0062	3732	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0063	3732	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0064	3736	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0065	3732	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0066	3731	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0067	3735	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0068	3732	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0069	3735	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	t0070	3732	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSG1L2_chr17_9795608_9827079	0/0	t0001	1787	215	47	41	93	9	25	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/1	t0002	1787	102	16	17	55	4	9	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	t0003	1787	48	1	6	30	3	8	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	1/0	t0004	1787	32	4	10	12	2	3	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	t0005	1787	29	0	0	29	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	t0006	1787	13	8	0	4	0	1	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	t0007	1787	7	1	3	0	0	3	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	t0008	1787	6	6	0	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	t0009	1787	5	4	0	1	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	t0010	1787	4	4	0	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	t0011	1787	3	0	3	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	t0012	1787	2	2	0	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	t0013	1787	2	2	0	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	t0014	1787	1	0	0	0	0	1	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	t0015	1787	1	0	0	1	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	t0016	1787	1	0	0	1	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	t0017	1787	1	1	0	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	t0018	1787	1	1	0	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	t0019	1787	1	1	0	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L_chr16_27782528_28068714	0/0	t0001	4137	67	20	3	34	2	8	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0002	4137	42	17	6	12	1	6	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0003	4137	28	2	13	8	1	4	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0004	4137	18	9	6	3	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0005	4137	7	3	1	0	0	3	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0006	4141	7	7	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/1	t0007	4141	6	0	4	0	0	1	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0008	4137	4	0	0	4	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0009	4137	4	4	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0010	4133	4	3	0	0	0	1	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0011	4137	3	0	1	2	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0012	4137	3	2	0	0	0	1	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0013	4137	3	0	3	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0014	4137	2	2	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0015	4137	2	0	0	0	0	2	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	1/0	t0016	4133	2	0	0	1	0	0	copy fasta	GSG1L	chr16	27782528	28068714