JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GSG1L_chr16_27782528_28068714	0/0	t0017	4127	2	0	0	0	0	2	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0018	4137	2	1	1	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0019	4137	2	0	0	0	0	2	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0020	4141	2	0	2	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0021	4141	2	0	1	0	0	1	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0022	4137	2	0	0	0	0	2	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0023	4137	2	2	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0024	4137	1	1	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0025	4137	1	0	0	0	0	1	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0026	4137	1	1	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0027	4137	1	0	0	0	0	1	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0028	4137	1	0	0	0	1	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0029	4137	1	0	0	1	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0030	4122	1	0	0	1	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0031	4137	1	0	0	1	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0032	4137	1	1	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0033	4137	1	0	0	1	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0034	4133	1	1	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0035	4137	1	0	0	1	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0036	4137	1	0	0	0	0	1	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0037	4141	1	1	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0038	4137	1	0	0	0	1	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0039	4137	1	0	1	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0040	4137	1	0	0	1	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0041	4141	1	1	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0042	4137	1	0	1	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0043	4137	1	1	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0044	4137	1	0	1	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0045	4137	1	1	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0046	4133	1	1	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	t0047	4133	1	1	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1_chr12_13078532_13108667	0/1	t0001	1526	399	79	66	197	13	43	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	1/0	t0002	1525	37	12	5	15	3	1	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	t0003	1526	2	2	0	0	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	t0004	1525	1	1	0	0	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	t0005	1525	1	0	0	0	0	1	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	t0006	1526	1	1	0	0	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	t0007	1525	1	1	0	0	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	t0008	1526	1	1	0	0	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	t0009	1526	1	0	0	1	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	t0010	1526	1	1	0	0	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	t0011	1526	1	0	1	0	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	t0012	1526	1	0	0	1	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	t0013	1526	1	0	0	0	0	1	copy fasta	GSG1	chr12	13078532	13108667
GSK3A_chr19_42225190_42247602	1/1	t0001	742	221	57	39	82	6	35	copy fasta	GSK3A	chr19	42225190	42247602
GSK3A_chr19_42225190_42247602	0/0	t0002	742	1	0	0	0	0	1	copy fasta	GSK3A	chr19	42225190	42247602
GSK3A_chr19_42225190_42247602	0/0	t0003	742	1	1	0	0	0	0	copy fasta	GSK3A	chr19	42225190	42247602
GSK3A_chr19_42225190_42247602	0/0	t0004	742	1	0	1	0	0	0	copy fasta	GSK3A	chr19	42225190	42247602
GSK3B_chr3_119816321_120099447	0/0	t0001	6478	81	16	7	48	2	8	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/1	t0002	6479	48	2	10	24	4	7	copy fasta	GSK3B	chr3	119816321	120099447