Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AMOTL1_chr11_94763356_94881748	0/0	t0037	6118	1	0	0	0	0	1	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0038	6122	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0039	6119	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0040	6115	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0041	6118	1	0	0	0	0	1	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0042	6118	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0043	6116	1	0	0	0	0	1	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0044	6110	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0045	6116	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0046	6118	1	0	0	1	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0047	6104	1	0	0	1	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0048	6110	1	0	0	1	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0049	6110	1	0	0	1	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0050	6112	1	0	0	1	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0051	6110	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0052	6110	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0053	6105	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	t0054	6110	1	0	0	0	0	1	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL2_chr3_134350347_134379447	0/0	t0001	2524	152	19	28	95	3	7	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0002	2526	46	16	14	5	2	9	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	1/1	t0003	2526	39	3	13	9	4	8	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0004	2526	14	13	1	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0005	2526	14	0	10	0	1	3	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0006	2526	12	12	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0007	2524	8	1	0	0	0	7	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0008	2526	8	8	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0009	2526	4	4	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0010	2524	3	2	1	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0011	2526	3	1	2	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0012	2526	3	3	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0013	2524	2	1	0	0	0	1	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0014	2526	2	2	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0015	2526	2	0	1	0	1	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0016	2526	2	0	2	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0017	2526	2	0	0	0	0	2	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0018	2524	1	0	0	0	1	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0019	2524	1	0	0	0	0	1	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0020	2524	1	0	1	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0021	2524	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0022	2524	1	0	0	1	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0023	2524	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0024	2524	1	0	0	0	0	1	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0025	2524	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0026	2524	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0027	2524	1	0	1	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0028	2524	1	0	0	0	0	1	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0029	2526	1	0	1	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0030	2526	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0031	2526	1	0	0	1	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0032	2526	1	0	0	1	0	0	copy fasta	AMOTL2	chr3	134350347	134379447