JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GSK3B_chr3_119816321_120099447	0/0	t0053	6477	1	1	0	0	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	t0054	6479	1	0	0	1	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	t0055	6478	1	0	0	1	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	t0056	6477	1	0	0	1	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	t0057	6479	1	0	0	0	0	1	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	t0058	6478	1	0	0	1	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	t0059	6481	1	0	1	0	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	t0060	6479	1	0	0	1	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	t0061	6479	1	0	0	1	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	t0062	6479	1	0	1	0	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	t0063	6479	1	0	0	1	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	t0064	6479	1	0	0	1	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	t0065	6479	1	0	0	1	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	t0066	6483	1	0	0	1	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	t0067	6488	1	1	0	0	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSKIP_chr14_96358526_96392288	0/0	t0001	1749	198	68	31	68	5	26	copy fasta	GSKIP	chr14	96358526	96392288
GSKIP_chr14_96358526_96392288	0/1	t0002	1749	99	16	24	44	6	8	copy fasta	GSKIP	chr14	96358526	96392288
GSKIP_chr14_96358526_96392288	0/0	t0003	1749	89	3	8	67	3	8	copy fasta	GSKIP	chr14	96358526	96392288
GSKIP_chr14_96358526_96392288	1/0	t0004	1749	7	0	2	4	0	0	copy fasta	GSKIP	chr14	96358526	96392288
GSKIP_chr14_96358526_96392288	0/0	t0005	1749	4	3	1	0	0	0	copy fasta	GSKIP	chr14	96358526	96392288
GSKIP_chr14_96358526_96392288	0/0	t0006	1749	3	3	0	0	0	0	copy fasta	GSKIP	chr14	96358526	96392288
GSKIP_chr14_96358526_96392288	0/0	t0007	1728	1	0	1	0	0	0	copy fasta	GSKIP	chr14	96358526	96392288
GSKIP_chr14_96358526_96392288	0/0	t0008	1749	1	0	1	0	0	0	copy fasta	GSKIP	chr14	96358526	96392288
GSKIP_chr14_96358526_96392288	0/0	t0009	1749	1	1	0	0	0	0	copy fasta	GSKIP	chr14	96358526	96392288
GSKIP_chr14_96358526_96392288	0/0	t0010	1749	1	0	0	1	0	0	copy fasta	GSKIP	chr14	96358526	96392288
GSKIP_chr14_96358526_96392288	0/0	t0011	1749	1	0	0	1	0	0	copy fasta	GSKIP	chr14	96358526	96392288
GSKIP_chr14_96358526_96392288	0/0	t0012	1749	1	0	0	1	0	0	copy fasta	GSKIP	chr14	96358526	96392288
GSKIP_chr14_96358526_96392288	0/0	t0013	1749	1	0	0	1	0	0	copy fasta	GSKIP	chr14	96358526	96392288
GSKIP_chr14_96358526_96392288	0/0	t0014	1749	1	0	0	1	0	0	copy fasta	GSKIP	chr14	96358526	96392288
GSN_chr9_121263162_121337842	1/1	t0001	400	252	69	47	99	14	21	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	t0002	402	46	0	13	28	0	5	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	t0003	402	11	7	4	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	t0004	404	10	7	1	0	0	2	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	t0005	400	1	1	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	t0006	400	1	0	0	1	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	t0007	402	1	0	1	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSPT1_chr16_11863128_11920956	0/0	t0001	5228	82	1	13	54	3	11	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0002	5228	67	7	16	43	0	1	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/1	t0003	5230	56	1	24	17	2	11	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0004	5230	43	6	9	18	0	10	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0005	5229	14	12	2	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0006	5230	11	9	2	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0007	5229	7	7	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0008	5228	7	0	0	7	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0009	5230	6	0	1	0	0	5	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0010	5230	6	6	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0011	5229	6	6	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0012	5231	6	2	4	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0013	5228	4	1	3	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0014	5224	4	4	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956