JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GSPT1_chr16_11863128_11920956	0/0	t0015	5229	3	3	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0016	5230	2	2	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0017	5228	2	2	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0018	5228	2	0	0	2	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0019	5228	2	2	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0020	5231	2	0	0	1	0	1	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0021	5230	2	2	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0022	5230	2	1	1	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0023	5231	2	0	0	1	0	1	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0024	5231	2	2	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0025	5229	2	0	0	2	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0026	5228	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0027	5228	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0028	5230	1	0	0	0	1	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0029	5225	1	0	0	0	0	1	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0030	5230	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0031	5257	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	1/0	t0032	5228	1	0	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0033	5230	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0034	5230	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0035	5228	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0036	5228	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0037	5228	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0038	5229	1	0	1	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0039	5230	1	0	0	0	0	1	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0040	5229	1	0	1	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0041	5228	1	0	0	0	0	1	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0042	5228	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0043	5228	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0044	5228	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0045	5229	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0046	5228	1	0	1	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0047	5228	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0048	5228	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0049	5225	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0050	5224	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0051	5229	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0052	5230	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0053	5230	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0054	5230	1	0	0	0	0	1	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	t0055	5228	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT2_chrX_51738442_51751232	0/0	t0001	905	243	49	30	130	9	25	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	1/1	t0002	905	64	27	14	14	2	5	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	0/0	t0003	906	1	0	0	1	0	0	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	0/0	t0004	908	1	0	0	1	0	0	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	0/0	t0005	905	1	1	0	0	0	0	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	0/0	t0006	903	1	0	0	1	0	0	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	0/0	t0007	905	1	0	0	1	0	0	copy fasta	GSPT2	chrX	51738442	51751232
GSR_chr8_30673066_30732846	0/0	t0001	1461	64	7	13	27	5	12	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0002	1464	52	3	18	26	1	4	copy fasta	GSR	chr8	30673066	30732846