JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GSR_chr8_30673066_30732846	0/1	t0003	1465	47	5	13	19	1	8	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0004	1462	37	4	9	19	1	4	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0005	1462	14	14	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	1/0	t0006	1466	12	5	0	2	2	2	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0007	1464	12	7	0	5	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0008	1462	10	4	0	4	0	2	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0009	1464	10	2	2	6	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0010	1462	7	2	1	3	1	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0011	1463	6	1	0	5	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0012	1461	6	5	0	1	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0013	1465	6	0	0	5	0	1	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0014	1462	6	6	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0015	1466	5	2	2	1	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0016	1464	4	0	1	0	0	3	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0017	1462	4	0	3	1	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0018	1466	3	2	0	1	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0019	1461	3	1	0	1	1	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0020	1466	3	3	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0021	1465	3	0	0	0	2	1	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0022	1465	2	2	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0023	1462	2	1	1	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0024	1461	2	2	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0025	1469	2	2	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0026	1463	2	1	1	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0027	1461	1	0	1	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0028	1464	1	0	0	1	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0029	1466	1	1	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0030	1463	1	0	0	1	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0031	1464	1	0	0	1	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0032	1462	1	1	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0033	1462	1	1	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0034	1463	1	0	0	0	0	1	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0035	1462	1	0	0	1	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0036	1463	1	0	0	0	0	1	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0037	1462	1	1	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0038	1461	1	1	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0039	1466	1	1	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0040	1464	1	0	0	0	0	1	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0041	1465	1	0	0	1	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0042	1469	1	1	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0043	1467	1	0	1	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0044	1466	1	1	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0045	1469	1	1	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0046	1463	1	0	0	1	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0047	1463	1	1	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0048	1462	1	1	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0049	1466	1	1	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	t0050	1462	1	1	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSS_chr20_34923432_34960806	1/1	t0001	485	345	86	55	155	15	32	copy fasta	GSS	chr20	34923432	34960806
GSS_chr20_34923432_34960806	0/0	t0002	485	2	0	1	0	1	0	copy fasta	GSS	chr20	34923432	34960806