JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GSS_chr20_34923432_34960806	0/0	t0003	485	2	2	0	0	0	0	copy fasta	GSS	chr20	34923432	34960806
GSS_chr20_34923432_34960806	0/0	t0004	485	1	0	0	1	0	0	copy fasta	GSS	chr20	34923432	34960806
GSS_chr20_34923432_34960806	0/0	t0005	485	1	1	0	0	0	0	copy fasta	GSS	chr20	34923432	34960806
GSS_chr20_34923432_34960806	0/0	t0006	485	1	1	0	0	0	0	copy fasta	GSS	chr20	34923432	34960806
GSTA1_chr6_52786371_52808816	0/0	t0001	550	321	64	54	165	10	28	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	1/1	t0002	550	83	13	18	30	2	18	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	t0003	550	9	6	3	0	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	t0004	550	6	0	0	6	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	t0005	550	6	6	0	0	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	t0006	550	6	5	1	0	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	t0007	550	3	0	0	3	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	t0008	550	2	2	0	0	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA2_chr6_52745087_52768475	1/1	t0001	553	247	34	56	106	11	38	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	t0002	553	99	40	6	47	3	3	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	t0003	553	49	0	9	34	2	4	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	t0004	553	12	9	3	0	0	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	t0005	553	8	0	0	8	0	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	t0006	553	7	0	0	7	0	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	t0007	553	5	5	0	0	0	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	t0008	553	4	4	0	0	0	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	t0009	553	4	2	2	0	0	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	t0010	553	2	2	0	0	0	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	t0011	553	1	0	0	0	1	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	t0012	553	1	0	0	0	0	1	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	t0013	553	1	0	0	0	1	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA3_chr6_52891646_52914698	1/1	t0001	240	400	73	72	198	16	39	copy fasta	GSTA3	chr6	52891646	52914698
GSTA3_chr6_52891646_52914698	0/0	t0002	240	15	15	0	0	0	0	copy fasta	GSTA3	chr6	52891646	52914698
GSTA3_chr6_52891646_52914698	0/0	t0003	240	5	3	1	0	0	1	copy fasta	GSTA3	chr6	52891646	52914698
GSTA3_chr6_52891646_52914698	0/0	t0004	240	1	0	1	0	0	0	copy fasta	GSTA3	chr6	52891646	52914698
GSTA3_chr6_52891646_52914698	0/0	t0005	240	1	1	0	0	0	0	copy fasta	GSTA3	chr6	52891646	52914698
GSTA4_chr6_52972953_53000284	0/0	t0001	572	145	29	19	75	5	17	copy fasta	GSTA4	chr6	52972953	53000284
GSTA4_chr6_52972953_53000284	1/1	t0002	572	78	21	17	26	6	6	copy fasta	GSTA4	chr6	52972953	53000284
GSTA4_chr6_52972953_53000284	0/0	t0003	572	77	33	16	20	2	6	copy fasta	GSTA4	chr6	52972953	53000284
GSTA4_chr6_52972953_53000284	0/0	t0004	572	9	7	2	0	0	0	copy fasta	GSTA4	chr6	52972953	53000284
GSTA4_chr6_52972953_53000284	0/0	t0005	572	4	0	0	4	0	0	copy fasta	GSTA4	chr6	52972953	53000284
GSTA4_chr6_52972953_53000284	0/0	t0006	572	4	0	0	4	0	0	copy fasta	GSTA4	chr6	52972953	53000284
GSTA4_chr6_52972953_53000284	0/0	t0007	572	3	0	2	0	1	0	copy fasta	GSTA4	chr6	52972953	53000284
GSTA4_chr6_52972953_53000284	0/0	t0008	572	1	0	0	1	0	0	copy fasta	GSTA4	chr6	52972953	53000284
GSTA4_chr6_52972953_53000284	0/0	t0009	572	1	0	0	0	0	1	copy fasta	GSTA4	chr6	52972953	53000284
GSTA4_chr6_52972953_53000284	0/0	t0010	572	1	1	0	0	0	0	copy fasta	GSTA4	chr6	52972953	53000284
GSTA4_chr6_52972953_53000284	0/0	t0011	572	1	1	0	0	0	0	copy fasta	GSTA4	chr6	52972953	53000284
GSTCD_chr4_105703784_105852725	0/0	t0001	2403	58	9	17	19	6	7	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/1	t0002	2403	39	22	4	7	3	2	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0003	2403	37	14	6	13	1	3	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0004	2399	11	9	2	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0005	2404	7	2	4	0	1	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0006	2404	7	0	6	0	0	1	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0007	2403	3	3	0	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0008	2399	2	2	0	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0009	2403	2	2	0	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725