JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GSTCD_chr4_105703784_105852725	0/0	t0010	2403	2	2	0	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0011	2404	2	1	0	1	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0012	2404	2	0	0	1	0	1	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0013	2403	1	1	0	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0014	2404	1	1	0	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0015	2404	1	1	0	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0016	2399	1	1	0	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0017	2402	1	0	1	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0018	2403	1	0	0	0	1	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0019	2403	1	1	0	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0020	2403	1	1	0	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0021	2399	1	1	0	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0022	2403	1	0	0	1	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0023	2403	1	0	0	1	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0024	2403	1	0	0	1	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	1/0	t0025	2403	1	0	0	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	t0026	2403	1	1	0	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTK1_chr7_143258441_143274115	1/1	t0001	352	377	92	72	161	12	38	copy fasta	GSTK1	chr7	143258441	143274115
GSTK1_chr7_143258441_143274115	0/0	t0002	352	3	3	0	0	0	0	copy fasta	GSTK1	chr7	143258441	143274115
GSTK1_chr7_143258441_143274115	0/0	t0003	352	1	1	0	0	0	0	copy fasta	GSTK1	chr7	143258441	143274115
GSTK1_chr7_143258441_143274115	0/0	t0004	334	1	0	0	1	0	0	copy fasta	GSTK1	chr7	143258441	143274115
GSTM1_chr1_109682817_109698745	0/0	t0000	0	122	28	25	57	5	7	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	t0001	508	90	15	21	46	1	7	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	t0002	508	30	23	4	0	1	2	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	t0003	508	3	3	0	0	0	0	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	t0004	508	1	1	0	0	0	0	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	t0005	509	1	0	0	1	0	0	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	t0006	508	1	1	0	0	0	0	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	t0007	511	1	0	0	1	0	0	copy fasta	GSTM1	chr1	109682817	109698745
GSTM2_chr1_109663057_109680286	1/1	t0001	510	353	91	66	138	16	40	copy fasta	GSTM2	chr1	109663057	109680286
GSTM2_chr1_109663057_109680286	0/0	t0002	510	2	2	0	0	0	0	copy fasta	GSTM2	chr1	109663057	109680286
GSTM2_chr1_109663057_109680286	0/0	t0003	510	1	1	0	0	0	0	copy fasta	GSTM2	chr1	109663057	109680286
GSTM3_chr1_109728937_109746038	0/1	t0001	3444	91	3	12	61	7	7	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	1/0	t0002	3445	61	7	24	18	4	7	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0003	3444	41	5	4	22	2	8	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0004	3445	32	0	6	21	0	5	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0005	3443	25	20	3	0	2	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0006	3446	14	3	2	7	0	2	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0007	3444	12	0	0	12	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0008	3445	11	1	2	7	0	1	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0009	3444	10	0	3	6	0	1	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0010	3444	6	3	1	0	1	1	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0011	3443	6	1	2	0	0	3	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0012	3445	5	2	2	1	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0013	3443	5	5	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0014	3443	5	5	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0015	3444	4	0	0	4	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0016	3443	4	1	0	3	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0017	3445	4	4	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0018	3443	3	1	0	2	0	0	copy fasta	GSTM3	chr1	109728937	109746038