JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GSTM3_chr1_109728937_109746038	0/0	t0019	3443	3	1	0	0	0	2	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0020	3442	3	3	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0021	3445	3	0	0	3	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0022	3445	2	0	0	2	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0023	3444	2	0	0	0	0	2	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0024	3444	2	0	0	2	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0025	3443	2	2	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0026	3445	2	2	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0027	3444	2	2	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0028	3443	2	2	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0029	3444	2	2	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0030	3444	2	1	1	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0031	3444	2	2	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0032	3443	2	2	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0033	3445	1	0	0	1	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0034	3446	1	0	0	1	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0035	3445	1	0	0	1	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0036	3445	1	0	0	1	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0037	3444	1	0	0	1	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0038	3444	1	0	0	1	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0039	3444	1	0	0	1	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0040	3444	1	0	0	0	0	1	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0041	3445	1	1	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0042	3444	1	1	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0043	3444	1	0	0	1	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0044	3445	1	1	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0045	3445	1	1	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0046	3444	1	1	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0047	3444	1	1	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0048	3444	1	1	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0049	3442	1	1	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0050	3444	1	1	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0051	3445	1	0	1	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0052	3442	1	1	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0053	3446	1	0	0	1	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0054	3445	1	0	0	0	0	1	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0055	3445	1	0	0	0	0	1	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0056	3445	1	0	0	1	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0057	3444	1	0	0	1	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0058	3443	1	1	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0059	3446	1	0	0	1	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0060	3445	1	0	1	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0061	3445	1	1	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	t0062	3444	1	0	0	1	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM4_chr1_109651099_109666700	1/0	t0001	738	169	34	34	62	8	30	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/1	t0002	738	128	4	36	69	6	12	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0003	738	21	18	0	3	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0004	738	12	12	0	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0005	738	6	6	0	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0006	738	4	4	0	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700