JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GSTM4_chr1_109651099_109666700	0/0	t0007	738	3	1	2	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0008	738	3	2	1	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0009	738	3	3	0	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0010	738	3	0	0	3	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0011	738	2	2	0	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0012	738	2	2	0	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0013	738	1	1	0	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0014	738	1	1	0	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0015	738	1	1	0	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0016	738	1	1	0	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0017	738	1	0	0	0	0	1	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0018	293	1	0	0	1	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0019	738	1	0	1	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	t0020	738	1	0	0	0	0	1	copy fasta	GSTM4	chr1	109651099	109666700
GSTM5_chr1_109707251_109723268	1/1	t0001	905	320	75	60	134	14	35	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	t0002	905	57	9	6	32	2	8	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	t0003	907	6	1	2	0	0	3	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	t0004	905	4	4	0	0	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	t0005	905	3	3	0	0	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	t0006	905	1	1	0	0	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	t0007	905	1	1	0	0	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	t0008	905	1	1	0	0	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	t0009	905	1	1	0	0	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTO1_chr10_104249892_104272455	1/1	t0001	88	345	65	58	173	12	35	copy fasta	GSTO1	chr10	104249892	104272455
GSTO1_chr10_104249892_104272455	0/0	t0002	88	30	29	1	0	0	0	copy fasta	GSTO1	chr10	104249892	104272455
GSTO1_chr10_104249892_104272455	0/0	t0003	88	2	0	1	0	0	1	copy fasta	GSTO1	chr10	104249892	104272455
GSTO1_chr10_104249892_104272455	0/0	t0004	88	1	0	0	1	0	0	copy fasta	GSTO1	chr10	104249892	104272455
GSTO2_chr10_104264184_104309950	0/0	t0001	5984	136	24	32	59	6	15	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0002	5984	40	4	6	20	3	7	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0003	5984	23	4	0	19	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0004	5984	10	10	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0005	5984	9	9	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0006	5984	8	0	2	6	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0007	5984	7	7	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/1	t0008	5985	6	2	0	2	0	1	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0009	5985	4	3	1	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0010	5984	3	3	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0011	5984	3	3	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0012	5984	3	0	0	3	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0013	5980	3	3	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0014	5984	2	0	0	2	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0015	5984	2	2	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	1/0	t0016	5984	2	0	0	0	1	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0017	5984	2	0	0	0	0	2	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0018	5984	2	1	1	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0019	5980	2	2	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0020	5984	2	0	0	0	2	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0021	5985	1	0	0	1	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0022	5984	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0023	5984	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950