JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GSTO2_chr10_104264184_104309950	0/0	t0024	5984	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0025	5984	1	0	1	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0026	5984	1	0	1	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0027	5984	1	0	0	0	0	1	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0028	5984	1	0	1	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0029	5984	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0030	5984	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0031	5984	1	0	1	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0032	5984	1	0	0	1	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0033	5985	1	0	1	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0034	5984	1	0	0	1	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0035	5984	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0036	5980	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0037	5980	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0038	5980	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0039	5980	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0040	5980	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0041	5980	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0042	5984	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0043	5984	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0044	5984	1	0	0	1	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0045	5984	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0046	5984	1	0	1	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0047	5984	1	0	1	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0048	5984	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0049	5984	1	0	0	1	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0050	5984	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	t0051	5984	1	0	1	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTP1_chr11_67578812_67591653	1/1	t0001	109	370	92	56	163	18	39	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	t0002	109	20	1	16	3	0	0	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	t0003	109	1	1	0	0	0	0	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	t0004	109	1	0	0	0	0	1	copy fasta	GSTP1	chr11	67578812	67591653
GSTT2B_chr22_23952414_23966195	0/0	t0001	374	99	22	22	45	1	9	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/1	t0002	374	9	0	1	5	1	1	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	t0003	374	5	0	5	0	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	t0004	374	4	4	0	0	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	t0005	374	1	0	0	1	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	t0006	374	1	0	0	1	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT4_chr22_23993401_24010453	1/0	t0001	239	68	6	5	48	3	5	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	t0002	240	52	16	13	16	2	5	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	t0003	244	16	0	1	15	0	0	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	t0004	245	7	0	0	7	0	0	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	t0005	246	6	0	0	5	0	1	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	t0006	238	5	0	0	4	0	1	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	t0007	240	3	0	1	0	1	1	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	t0008	239	1	1	0	0	0	0	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	t0009	239	1	0	0	1	0	0	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	t0010	239	1	1	0	0	0	0	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	t0011	238	1	0	0	0	0	1	copy fasta	GSTT4	chr22	23993401	24010453
GSTZ1_chr14_77316036_77336597	1/1	t0001	536	408	92	75	189	11	39	copy fasta	GSTZ1	chr14	77316036	77336597