Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AMOTL2_chr3_134350347_134379447	0/0	t0033	2526	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0034	2526	1	0	1	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0035	2526	1	0	1	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0036	2526	1	0	1	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	t0037	2526	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOT_chrX_112769877_112845831	1/1	t0001	4359	88	4	19	54	3	6	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0002	4359	50	10	9	27	0	4	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0003	4359	28	0	0	25	0	3	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0004	4359	18	16	2	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0005	4359	17	16	1	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0006	4359	14	1	3	4	1	5	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0007	4355	7	3	4	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0008	4359	6	6	0	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0009	4359	5	4	1	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0010	4359	5	5	0	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0011	4356	2	2	0	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0012	4359	2	0	0	2	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0013	4359	2	1	1	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0014	4359	2	0	2	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0015	4359	2	2	0	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0016	4359	2	2	0	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0017	4359	2	2	0	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0018	4359	1	0	0	1	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0019	4359	1	0	0	1	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0020	4359	1	0	0	1	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0021	4360	1	0	0	1	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0022	4359	1	1	0	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0023	4359	1	1	0	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0024	4359	1	0	0	0	0	1	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0025	4359	1	1	0	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0026	4360	1	1	0	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0027	4359	1	0	1	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0028	4359	1	0	0	0	1	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0029	4359	1	0	0	1	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0030	4359	1	1	0	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0031	4359	1	0	0	0	0	1	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0032	4359	1	1	0	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0033	4359	1	0	0	1	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0034	4359	1	0	0	1	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	t0035	4359	1	0	0	1	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMPD1_chr1_114668098_114700546	1/1	t0001	92	356	96	70	138	14	36	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	t0002	92	1	0	0	1	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	t0003	92	1	0	0	1	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD2_chr1_109614837_109637051	1/1	t0001	1604	246	45	43	116	12	28	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	t0002	1604	81	21	2	48	0	10	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	t0003	1604	38	13	13	5	2	5	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	t0004	1604	7	7	0	0	0	0	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	t0005	1604	5	4	1	0	0	0	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	t0006	1608	4	2	0	0	2	0	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	t0007	1604	1	0	0	1	0	0	copy fasta	AMPD2	chr1	109614837	109637051