JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GTDC1_chr2_143933068_144337512	0/0	t0031	9209	1	0	0	0	1	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0032	9209	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0033	9210	1	0	0	0	0	1	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0034	9209	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0035	9209	1	0	0	1	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0036	9208	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0037	9210	1	0	0	1	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0038	9208	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0039	9210	1	0	0	1	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0040	9209	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0041	9209	1	0	0	0	1	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0042	9198	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0043	9209	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0044	9210	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0045	9209	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0046	9214	1	0	1	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTF2A1L_chr2_48612856_48684604	0/1	t0001	182	319	72	64	128	13	41	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	t0002	182	19	18	1	0	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	1/0	t0003	182	3	0	0	0	1	1	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	t0004	182	1	1	0	0	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	t0005	182	1	0	1	0	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1L_chr2_48612856_48684604	0/0	t0006	182	1	1	0	0	0	0	copy fasta	GTF2A1L	chr2	48612856	48684604
GTF2A1_chr14_81170452_81225959	0/1	t0001	5213	92	10	19	42	4	16	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0002	5212	61	6	11	36	1	7	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	1/0	t0003	5213	32	0	0	27	0	4	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0004	5213	20	18	2	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0005	5214	19	2	4	11	0	2	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0006	5212	17	14	2	0	0	1	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0007	5216	10	9	1	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0008	5212	10	1	4	2	2	1	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0009	5212	10	7	0	0	0	3	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0010	5212	9	1	7	1	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0011	5213	6	0	0	6	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0012	5213	4	4	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0013	5212	4	3	1	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0014	5215	3	3	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0015	5211	3	3	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0016	5213	3	3	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0017	5209	3	0	0	3	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0018	5212	2	0	0	1	1	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0019	5212	2	0	0	1	0	1	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0020	5212	2	0	1	0	1	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0021	5212	2	0	0	2	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0022	5213	2	0	0	2	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0023	5214	2	0	0	2	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0024	5214	2	2	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0025	5216	1	1	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0026	5216	1	1	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0027	5215	1	0	0	0	1	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0028	5215	1	1	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959