JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GTF2A1_chr14_81170452_81225959	0/0	t0029	5214	1	0	0	1	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0030	5213	1	1	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0031	5211	1	1	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0032	5212	1	0	1	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0033	5212	1	1	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0034	5213	1	1	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0035	5213	1	1	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0036	5213	1	0	0	1	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0037	5213	1	1	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0038	5213	1	0	0	1	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0039	5213	1	0	0	0	0	1	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0040	5213	1	0	0	0	0	1	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0041	5214	1	1	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0042	5212	1	0	0	1	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0043	5212	1	0	0	0	0	1	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0044	5212	1	1	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0045	5212	1	0	0	1	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0046	5212	1	0	0	1	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0047	5213	1	0	0	1	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0048	5212	1	0	0	1	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0049	5214	1	0	0	1	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0050	5213	1	0	1	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0051	5213	1	1	0	0	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0052	5213	1	0	0	0	0	1	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0053	5213	1	0	0	0	0	1	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A1_chr14_81170452_81225959	0/0	t0054	5214	1	0	0	1	0	0	copy fasta	GTF2A1	chr14	81170452	81225959
GTF2A2_chr15_59633062_59662515	0/1	t0001	1227	169	15	38	92	7	16	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0002	1233	81	10	1	58	1	11	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0003	1230	66	12	28	16	3	7	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0004	1230	58	37	8	8	1	4	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0005	1230	24	1	7	10	4	2	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	1/0	t0006	1230	7	6	0	0	0	0	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0007	1230	5	0	0	5	0	0	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0008	1230	3	2	1	0	0	0	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0009	1233	3	3	0	0	0	0	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0010	1233	2	0	0	1	0	1	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0011	1227	2	0	1	1	0	0	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0012	1227	2	0	0	0	0	2	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0013	1233	1	0	0	1	0	0	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0014	1257	1	0	0	0	1	0	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0015	1230	1	1	0	0	0	0	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0016	1230	1	0	0	0	1	0	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0017	1227	1	0	0	0	0	1	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0018	1227	1	0	0	1	0	0	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0019	1230	1	0	1	0	0	0	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0020	1227	1	0	0	0	0	1	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0021	1233	1	0	0	0	0	1	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0022	1230	1	0	1	0	0	0	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0023	1230	1	0	0	1	0	0	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0024	1230	1	1	0	0	0	0	copy fasta	GTF2A2	chr15	59633062	59662515