JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GTF2A2_chr15_59633062_59662515	0/0	t0025	1233	1	1	0	0	0	0	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2A2_chr15_59633062_59662515	0/0	t0026	1230	1	1	0	0	0	0	copy fasta	GTF2A2	chr15	59633062	59662515
GTF2B_chr1_88847633_88896567	1/1	t0001	649	311	56	63	142	11	37	copy fasta	GTF2B	chr1	88847633	88896567
GTF2B_chr1_88847633_88896567	0/0	t0002	656	27	23	3	0	0	1	copy fasta	GTF2B	chr1	88847633	88896567
GTF2B_chr1_88847633_88896567	0/0	t0003	656	24	7	2	14	1	0	copy fasta	GTF2B	chr1	88847633	88896567
GTF2B_chr1_88847633_88896567	0/0	t0004	649	5	5	0	0	0	0	copy fasta	GTF2B	chr1	88847633	88896567
GTF2B_chr1_88847633_88896567	0/0	t0005	656	2	2	0	0	0	0	copy fasta	GTF2B	chr1	88847633	88896567
GTF2B_chr1_88847633_88896567	0/0	t0006	652	2	2	0	0	0	0	copy fasta	GTF2B	chr1	88847633	88896567
GTF2B_chr1_88847633_88896567	0/0	t0007	649	1	1	0	0	0	0	copy fasta	GTF2B	chr1	88847633	88896567
GTF2E1_chr3_120737744_120788069	1/1	t0001	1681	156	37	27	55	7	28	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	t0002	1682	112	27	19	64	0	2	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	t0003	1681	80	3	24	36	7	10	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	t0004	1681	5	5	0	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	t0005	1681	4	3	1	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	t0006	1681	3	0	0	3	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	t0007	1682	3	0	0	3	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	t0008	1681	2	1	1	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	t0009	1681	2	2	0	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	t0010	1682	2	2	0	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	t0011	1681	1	0	0	1	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	t0012	1681	1	1	0	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	t0013	1681	1	0	0	1	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	t0014	1682	1	0	0	1	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	t0015	1681	1	0	1	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	t0016	1682	1	0	1	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	t0017	1681	1	1	0	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E2_chr8_30573318_30663236	1/0	t0001	872	251	57	46	121	5	21	copy fasta	GTF2E2	chr8	30573318	30663236
GTF2E2_chr8_30573318_30663236	0/1	t0002	878	99	10	17	48	6	17	copy fasta	GTF2E2	chr8	30573318	30663236
GTF2E2_chr8_30573318_30663236	0/0	t0003	881	8	8	0	0	0	0	copy fasta	GTF2E2	chr8	30573318	30663236
GTF2E2_chr8_30573318_30663236	0/0	t0004	872	6	6	0	0	0	0	copy fasta	GTF2E2	chr8	30573318	30663236
GTF2E2_chr8_30573318_30663236	0/0	t0005	872	6	6	0	0	0	0	copy fasta	GTF2E2	chr8	30573318	30663236
GTF2E2_chr8_30573318_30663236	0/0	t0006	881	3	3	0	0	0	0	copy fasta	GTF2E2	chr8	30573318	30663236
GTF2E2_chr8_30573318_30663236	0/0	t0007	878	1	0	0	1	0	0	copy fasta	GTF2E2	chr8	30573318	30663236
GTF2E2_chr8_30573318_30663236	0/0	t0008	872	1	0	0	1	0	0	copy fasta	GTF2E2	chr8	30573318	30663236
GTF2E2_chr8_30573318_30663236	0/0	t0009	878	1	0	0	1	0	0	copy fasta	GTF2E2	chr8	30573318	30663236
GTF2E2_chr8_30573318_30663236	0/0	t0010	887	1	0	0	0	1	0	copy fasta	GTF2E2	chr8	30573318	30663236
GTF2E2_chr8_30573318_30663236	0/0	t0011	872	1	0	1	0	0	0	copy fasta	GTF2E2	chr8	30573318	30663236
GTF2F1_chr19_6374572_6398164	1/1	t0001	879	174	5	41	96	11	19	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	t0002	878	96	18	9	58	0	11	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	t0003	878	51	45	5	1	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	t0004	878	21	6	4	1	2	8	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	t0005	879	10	9	1	0	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	t0006	880	7	0	1	5	0	1	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	t0007	878	5	0	3	0	1	1	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	t0008	878	3	3	0	0	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	t0009	878	2	0	0	2	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	t0010	879	2	0	0	2	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	t0011	878	2	0	0	2	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	t0012	878	2	0	0	2	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	t0013	878	1	1	0	0	0	0	copy fasta	GTF2F1	chr19	6374572	6398164