JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GTF2F1_chr19_6374572_6398164	0/0	t0014	878	1	1	0	0	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	t0015	878	1	0	0	1	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F2_chr13_45115510_45289893	1/1	t0001	1479	193	63	40	66	4	18	copy fasta	GTF2F2	chr13	45115510	45289893
GTF2F2_chr13_45115510_45289893	0/0	t0002	1479	12	12	0	0	0	0	copy fasta	GTF2F2	chr13	45115510	45289893
GTF2F2_chr13_45115510_45289893	0/0	t0003	1479	2	2	0	0	0	0	copy fasta	GTF2F2	chr13	45115510	45289893
GTF2F2_chr13_45115510_45289893	0/0	t0004	1479	1	1	0	0	0	0	copy fasta	GTF2F2	chr13	45115510	45289893
GTF2F2_chr13_45115510_45289893	0/0	t0005	1479	1	1	0	0	0	0	copy fasta	GTF2F2	chr13	45115510	45289893
GTF2F2_chr13_45115510_45289893	0/0	t0006	1479	1	1	0	0	0	0	copy fasta	GTF2F2	chr13	45115510	45289893
GTF2H1_chr11_18317567_18372045	1/1	t0001	1366	201	68	32	74	5	20	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	t0002	1367	123	5	23	75	10	10	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	t0003	1366	16	15	1	0	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	t0004	1367	9	8	1	0	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	t0005	1367	7	0	6	0	1	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	t0006	1366	4	0	0	4	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	t0007	1366	2	0	0	2	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	t0008	1367	2	0	2	0	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	t0009	1367	1	0	0	1	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	t0010	1366	1	1	0	0	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	t0011	1366	1	0	1	0	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	t0012	1366	1	0	0	1	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	t0013	1367	1	0	0	1	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	t0014	1366	1	1	0	0	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H2C_chr5_69555191_69600221	0/0	t0001	3366	16	5	3	5	2	1	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0002	3368	13	3	6	4	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0003	3372	9	3	2	2	0	2	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0004	3367	7	0	2	2	0	3	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0005	3369	6	0	1	4	0	1	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0006	3349	5	0	4	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0007	3370	4	1	0	3	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0008	3374	4	0	1	2	0	1	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0009	3370	4	2	1	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0010	3371	4	4	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0011	3368	3	3	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0012	3368	3	0	2	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0013	3368	3	0	1	1	0	1	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0014	3373	3	0	0	1	0	2	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0015	3370	3	3	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0016	3370	2	0	1	0	1	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0017	3371	2	1	1	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0018	3371	2	0	0	2	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0019	3371	2	0	0	2	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0020	3373	2	0	2	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0021	3369	2	0	0	1	0	1	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0022	3376	2	0	1	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0023	3374	2	0	0	2	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0024	3367	2	2	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0025	3361	2	0	0	0	0	2	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0026	3368	1	0	1	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0027	3367	1	0	1	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0028	3370	1	0	0	0	0	1	copy fasta	GTF2H2C	chr5	69555191	69600221