JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GTF2H2C_chr5_69555191_69600221	0/0	t0029	3375	1	0	1	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0030	3373	1	0	0	0	0	1	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0031	3371	1	0	0	0	0	1	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0032	3367	1	0	1	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0033	3374	1	0	1	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0034	3374	1	0	0	0	1	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0035	3372	1	0	0	0	0	1	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/1	t0036	3366	1	0	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0037	3359	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0038	3366	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0039	3401	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0040	3369	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0041	3367	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0042	3368	1	0	1	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0043	3369	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0044	3366	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0045	3350	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0046	3349	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0047	3374	1	0	0	0	0	1	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0048	3373	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0049	3374	1	0	1	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0050	3374	1	0	1	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0051	3366	1	0	0	0	1	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0052	3356	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0053	3369	1	0	0	0	0	1	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0054	3370	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0055	3372	1	0	1	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0056	3373	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0057	3373	1	0	1	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0058	3370	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0059	3374	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0060	3375	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0061	3375	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0062	3371	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0063	3371	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0064	3370	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0065	3371	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0066	3367	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0067	3367	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0068	3365	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0069	3378	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0070	3372	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0071	3374	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0072	3368	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0073	3369	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0074	3370	1	0	0	0	1	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0075	3372	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0076	3367	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0077	3367	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0078	3365	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221