JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GTF2H2C_chr5_69555191_69600221	0/0	t0079	3366	1	0	1	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0080	3350	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0081	3349	1	0	0	0	0	1	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0082	3369	1	0	1	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0083	3372	1	0	0	0	0	1	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0084	3368	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	t0085	3368	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2_chr5_71030347_71072676	0/1	t0001	547	72	25	21	13	2	10	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H2_chr5_71030347_71072676	0/0	t0002	547	2	0	2	0	0	0	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H2_chr5_71030347_71072676	0/0	t0003	546	2	2	0	0	0	0	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H2_chr5_71030347_71072676	0/0	t0004	547	1	0	0	1	0	0	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H2_chr5_71030347_71072676	0/0	t0005	547	1	1	0	0	0	0	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H2_chr5_71030347_71072676	0/0	t0006	547	1	0	1	0	0	0	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H3_chr12_123628829_123667604	1/1	t0001	2401	148	35	28	52	11	20	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0002	2401	44	9	13	7	5	10	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0003	2412	12	11	1	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0004	2414	7	4	1	0	0	2	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0005	2414	7	5	2	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0006	2412	7	6	1	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0007	2412	5	5	0	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0008	2400	4	1	0	0	0	3	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0009	2402	3	0	1	0	0	2	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0010	2401	3	0	0	3	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0011	2414	2	2	0	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0012	2416	2	2	0	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0013	2413	2	2	0	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0014	2413	2	2	0	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0015	2397	2	0	0	2	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0016	2402	2	0	0	1	0	1	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0017	2400	2	0	0	2	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0018	2413	1	1	0	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0019	2416	1	1	0	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0020	2415	1	0	1	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0021	2413	1	0	1	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0022	2416	1	1	0	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0023	2413	1	0	1	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0024	2414	1	1	0	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0025	2411	1	1	0	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0026	2414	1	1	0	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0027	2401	1	0	0	1	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0028	2402	1	0	0	0	1	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0029	2400	1	1	0	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0030	2401	1	0	0	1	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0031	2401	1	0	1	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0032	2397	1	0	0	1	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0033	2401	1	0	0	0	1	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0034	2401	1	0	1	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	t0035	2401	1	1	0	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H4_chr6_30903207_30919106	0/0	t0001	324	219	57	51	75	9	27	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/1	t0002	324	157	16	22	98	6	14	copy fasta	GTF2H4	chr6	30903207	30919106