JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GTF2H4_chr6_30903207_30919106	0/0	t0003	323	30	18	3	4	1	4	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/0	t0004	324	2	0	2	0	0	0	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/0	t0005	334	1	0	0	0	0	1	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/0	t0006	324	1	0	0	1	0	0	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/0	t0007	324	1	1	0	0	0	0	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H5_chr6_158163350_158204344	0/0	t0001	7289	55	1	16	32	0	6	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0002	7269	41	3	2	34	0	2	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0003	7268	40	1	6	21	3	9	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0004	7268	15	6	2	2	1	4	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0005	7290	13	2	2	8	0	1	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0006	7266	9	1	2	1	2	3	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0007	7293	9	8	1	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0008	7269	8	1	2	4	0	1	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0009	7266	8	0	4	0	0	4	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/1	t0010	7270	7	0	0	5	0	1	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0011	7291	5	5	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0012	7294	5	5	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0013	7290	5	0	1	4	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0014	7269	4	0	0	3	0	1	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0015	7268	4	0	4	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0016	7268	4	3	1	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0017	7292	4	3	0	0	0	1	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0018	7291	4	2	0	1	0	1	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0019	7267	3	0	2	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0020	7267	3	1	1	0	0	1	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0021	7289	2	0	0	2	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0022	7266	2	0	2	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0023	7271	2	0	0	2	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0024	7267	2	1	0	0	0	1	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0025	7270	2	0	0	2	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0026	7269	2	0	0	2	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0027	7268	2	0	2	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0028	7266	2	0	0	0	0	2	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0029	7268	2	0	1	0	1	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0030	7268	2	2	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0031	7268	2	0	0	2	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0032	7267	2	0	0	1	1	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0033	7269	2	0	1	0	1	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0034	7289	2	2	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0035	7293	2	0	2	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0036	7292	2	2	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0037	7291	2	1	1	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0038	7293	2	2	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0039	7289	2	2	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0040	7289	2	2	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0041	7290	2	0	0	0	0	2	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0042	7292	2	2	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0043	7287	2	2	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0044	7288	2	2	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0045	7291	2	2	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344