JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GTF2H5_chr6_158163350_158204344	0/0	t0046	7288	2	0	0	2	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0047	7289	2	0	0	2	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0048	7289	2	0	0	2	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0049	7288	2	0	1	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0050	7289	2	0	0	2	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0051	7268	2	0	1	0	0	1	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0052	7266	1	0	1	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0053	7269	1	0	0	0	0	1	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0054	7271	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0055	7272	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0056	7270	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0057	7270	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0058	7266	1	0	0	0	0	1	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0059	7271	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0060	7270	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0061	7269	1	0	1	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0062	7269	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0063	7268	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0064	7269	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0065	7269	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0066	7269	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0067	7269	1	0	0	0	0	1	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0068	7269	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0069	7269	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0070	7268	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0071	7270	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0072	7267	1	0	1	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0073	7265	1	0	0	0	1	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0074	7268	1	0	0	0	0	1	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0075	7269	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0076	7269	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0077	7268	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0078	7268	1	0	0	0	0	1	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	1/0	t0079	7268	1	0	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0080	7268	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0081	7268	1	0	0	0	1	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0082	7269	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0083	7266	1	0	1	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0084	7267	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0085	7267	1	0	0	0	1	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0086	7268	1	0	1	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0087	7270	1	0	1	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0088	7267	1	0	1	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0089	7288	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0090	7293	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0091	7292	1	0	0	0	0	1	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0092	7292	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0093	7294	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0094	7294	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0095	7292	1	0	1	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344