JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GTF2H5_chr6_158163350_158204344	0/0	t0096	7291	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0097	7291	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0098	7291	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0099	7289	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0100	7290	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0101	7291	1	0	0	0	1	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0102	7289	1	0	0	0	0	1	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0103	7289	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0104	7287	1	0	1	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0105	7286	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0106	7272	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0107	7288	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0108	7286	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0109	7286	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0110	7291	1	0	1	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0111	7291	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0112	7289	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0113	7289	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0114	7288	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0115	7289	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0116	7289	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0117	7289	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0118	7289	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0119	7269	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0120	7288	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0121	7287	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0122	7287	1	0	0	1	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0123	7287	1	1	0	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0124	7291	1	0	0	0	1	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0125	7270	1	0	1	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0126	7266	1	0	1	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2H5_chr6_158163350_158204344	0/0	t0127	7269	1	0	1	0	0	0	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2IRD1_chr7_74448906_74607605	0/1	t0001	449	172	41	42	60	8	20	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	1/0	t0002	450	37	8	10	9	2	7	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	t0003	448	31	2	3	24	0	2	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	t0004	449	14	11	0	3	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	t0005	448	2	2	0	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	t0006	450	1	1	0	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	t0007	449	1	1	0	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	t0008	449	1	0	0	0	0	1	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	t0009	449	1	0	1	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	t0010	450	1	0	1	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	t0011	449	1	0	1	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD2B_chr7_75087590_75154817	1/1	t0001	702	109	26	18	44	6	13	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	t0002	703	18	17	1	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	t0003	701	12	2	5	1	3	1	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	t0004	701	9	3	3	2	1	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	t0005	701	7	1	4	1	0	1	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	t0006	702	5	0	2	0	0	3	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	t0007	702	3	3	0	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817