JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GTF2IRD2B_chr7_75087590_75154817	0/0	t0008	702	3	3	0	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	t0009	701	1	0	0	0	0	1	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	t0010	703	1	1	0	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	t0011	701	1	0	1	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	t0012	702	1	0	0	0	0	1	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2_chr7_74791151_74856605	1/1	t0001	756	5	1	1	0	0	1	copy fasta	GTF2IRD2	chr7	74791151	74856605
GTF2IRD2_chr7_74791151_74856605	0/0	t0002	756	2	1	0	0	0	1	copy fasta	GTF2IRD2	chr7	74791151	74856605
GTF2IRD2_chr7_74791151_74856605	0/0	t0003	756	1	0	1	0	0	0	copy fasta	GTF2IRD2	chr7	74791151	74856605
GTF2I_chr7_74652718_74765692	1/1	t0001	1519	84	45	12	11	5	9	copy fasta	GTF2I	chr7	74652718	74765692
GTF2I_chr7_74652718_74765692	0/0	t0002	1519	77	21	20	20	5	11	copy fasta	GTF2I	chr7	74652718	74765692
GTF2I_chr7_74652718_74765692	0/0	t0003	1519	5	0	3	2	0	0	copy fasta	GTF2I	chr7	74652718	74765692
GTF2I_chr7_74652718_74765692	0/0	t0004	1520	4	4	0	0	0	0	copy fasta	GTF2I	chr7	74652718	74765692
GTF2I_chr7_74652718_74765692	0/0	t0005	1519	1	0	0	1	0	0	copy fasta	GTF2I	chr7	74652718	74765692
GTF2I_chr7_74652718_74765692	0/0	t0006	1519	1	1	0	0	0	0	copy fasta	GTF2I	chr7	74652718	74765692
GTF2I_chr7_74652718_74765692	0/0	t0007	1519	1	0	1	0	0	0	copy fasta	GTF2I	chr7	74652718	74765692
GTF2I_chr7_74652718_74765692	0/0	t0008	1519	1	1	0	0	0	0	copy fasta	GTF2I	chr7	74652718	74765692
GTF3A_chr13_27419619_27440823	0/1	t0001	346	228	57	44	89	7	30	copy fasta	GTF3A	chr13	27419619	27440823
GTF3A_chr13_27419619_27440823	1/0	t0002	346	81	11	10	57	0	2	copy fasta	GTF3A	chr13	27419619	27440823
GTF3A_chr13_27419619_27440823	0/0	t0003	346	49	6	7	28	4	4	copy fasta	GTF3A	chr13	27419619	27440823
GTF3A_chr13_27419619_27440823	0/0	t0004	346	38	25	2	10	0	1	copy fasta	GTF3A	chr13	27419619	27440823
GTF3A_chr13_27419619_27440823	0/0	t0005	346	11	1	3	1	3	3	copy fasta	GTF3A	chr13	27419619	27440823
GTF3A_chr13_27419619_27440823	0/0	t0006	346	11	0	8	3	0	0	copy fasta	GTF3A	chr13	27419619	27440823
GTF3A_chr13_27419619_27440823	0/0	t0007	346	1	0	0	1	0	0	copy fasta	GTF3A	chr13	27419619	27440823
GTF3A_chr13_27419619_27440823	0/0	t0008	346	1	0	0	1	0	0	copy fasta	GTF3A	chr13	27419619	27440823
GTF3C1_chr16_27455613_27554913	1/1	t0001	761	199	70	32	72	10	13	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	t0002	761	11	0	10	0	0	1	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	t0003	761	7	6	1	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	t0004	761	1	1	0	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	t0005	761	1	1	0	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	t0006	761	1	0	1	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C2_chr2_27320854_27361764	1/1	t0001	872	283	81	59	94	16	31	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C2_chr2_27320854_27361764	0/0	t0002	872	1	1	0	0	0	0	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C2_chr2_27320854_27361764	0/0	t0003	872	1	0	0	0	0	1	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C2_chr2_27320854_27361764	0/0	t0004	872	1	0	1	0	0	0	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C3_chr2_196758035_196804683	1/1	t0001	1601	200	68	54	53	8	15	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	t0002	1601	27	11	3	2	3	8	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	t0003	1606	8	0	3	0	0	5	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	t0004	1601	6	0	2	4	0	0	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	t0005	1601	2	0	2	0	0	0	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	t0006	1601	2	2	0	0	0	0	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	t0007	1601	2	0	0	2	0	0	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	t0008	1601	1	0	0	1	0	0	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	t0009	1601	1	1	0	0	0	0	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	t0010	1601	1	1	0	0	0	0	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	t0011	1601	1	0	0	0	1	0	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C3_chr2_196758035_196804683	0/0	t0012	1616	1	1	0	0	0	0	copy fasta	GTF3C3	chr2	196758035	196804683
GTF3C4_chr9_132665464_132699953	0/0	t0001	6139	94	5	15	59	5	10	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0002	6144	74	2	3	65	0	4	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0003	6144	72	17	26	8	6	15	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0004	6139	49	17	12	18	1	1	copy fasta	GTF3C4	chr9	132665464	132699953