Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AMPD2_chr1_109614837_109637051	0/0	t0008	1604	1	0	0	0	0	1	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	t0009	1604	1	0	1	0	0	0	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	t0010	1604	1	1	0	0	0	0	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	t0011	1604	1	0	0	1	0	0	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	t0012	1604	1	1	0	0	0	0	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	t0013	1604	1	0	0	1	0	0	copy fasta	AMPD2	chr1	109614837	109637051
AMPD3_chr11_10450264_10512579	0/1	t0001	1886	199	22	41	103	11	21	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0002	1886	45	1	11	28	0	5	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0003	1886	38	6	0	28	0	4	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0004	1888	25	17	6	0	0	2	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0005	1886	18	8	4	0	3	3	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0006	1886	11	1	5	0	2	3	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0007	1886	6	6	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0008	1887	6	4	0	0	0	2	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0009	1886	4	0	2	0	1	1	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0010	1887	4	4	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0011	1888	4	2	0	0	0	2	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0012	1887	3	3	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0013	1886	3	2	1	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	1/0	t0014	1886	3	1	1	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0015	1886	3	3	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0016	1888	2	2	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0017	1886	2	2	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0018	1886	2	2	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0019	1886	2	0	0	0	1	1	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0020	1886	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0021	1886	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0022	1888	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0023	1888	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0024	1886	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0025	1888	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0026	1886	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0027	1886	1	0	0	1	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0028	1886	1	0	1	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	t0029	1886	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPH_chr7_38378704_38636373	1/0	t0001	1137	91	12	13	42	4	19	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	t0002	1137	64	22	16	20	2	4	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/1	t0003	1137	58	7	13	24	4	9	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	t0004	1137	34	29	4	0	1	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	t0005	1137	26	0	7	15	1	3	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	t0006	1137	12	1	5	0	1	5	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	t0007	1137	1	0	0	1	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	t0008	1137	1	0	0	0	1	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	t0009	1137	1	1	0	0	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMTN_chr4_70513569_70537743	0/1	t0001	380	364	77	66	167	12	41	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	1/0	t0002	380	75	2	9	55	4	4	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	t0003	380	15	13	2	0	0	0	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	t0004	380	2	2	0	0	0	0	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	t0005	380	1	0	0	0	0	1	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	t0006	380	1	0	1	0	0	0	copy fasta	AMTN	chr4	70513569	70537743