JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GTF3C4_chr9_132665464_132699953	0/1	t0005	6138	27	0	13	10	1	2	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0006	6139	27	27	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	1/0	t0007	6144	17	0	2	8	2	4	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0008	6139	7	0	0	6	0	1	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0009	6138	5	5	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0010	6144	4	0	0	4	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0011	6139	3	0	0	3	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0012	6139	3	0	0	3	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0013	6139	3	3	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0014	6139	2	2	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0015	6139	2	0	0	2	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0016	6139	2	0	0	2	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0017	6144	2	0	2	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0018	6142	2	2	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0019	6139	2	2	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0020	6144	2	2	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0021	6138	1	1	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0022	6139	1	0	1	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0023	6139	1	0	0	0	0	1	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0024	6139	1	1	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0025	6139	1	0	0	1	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0026	6139	1	1	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0027	6139	1	1	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0028	6139	1	0	0	0	0	1	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0029	6139	1	0	0	1	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0030	6139	1	0	0	0	0	1	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0031	6139	1	0	0	1	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0032	6144	1	0	0	0	0	1	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0033	6144	1	0	0	1	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0034	6144	1	0	1	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0035	6144	1	0	1	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0036	6144	1	1	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0037	6144	1	0	0	1	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0038	6144	1	0	0	0	1	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0039	6144	1	0	0	1	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0040	6144	1	0	0	1	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0041	6144	1	0	0	1	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0042	6139	1	1	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0043	6139	1	0	0	0	0	1	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0044	6139	1	0	0	1	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0045	6139	1	1	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0046	6139	1	1	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0047	6139	1	1	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0048	6144	1	1	0	0	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C4_chr9_132665464_132699953	0/0	t0049	6144	1	0	0	1	0	0	copy fasta	GTF3C4	chr9	132665464	132699953
GTF3C5_chr9_133025997_133063503	1/1	t0001	539	297	78	48	133	9	27	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C5_chr9_133025997_133063503	0/0	t0002	539	78	10	27	31	5	5	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C5_chr9_133025997_133063503	0/0	t0003	539	2	2	0	0	0	0	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C5_chr9_133025997_133063503	0/0	t0004	539	2	0	0	0	0	2	copy fasta	GTF3C5	chr9	133025997	133063503
GTF3C5_chr9_133025997_133063503	0/0	t0005	539	1	0	1	0	0	0	copy fasta	GTF3C5	chr9	133025997	133063503