JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GTPBP1_chr22_38700944_38738587	0/0	t0034	2902	1	0	0	1	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0035	2904	1	1	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0036	2904	1	0	0	0	1	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0037	2906	1	1	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0038	2910	1	0	0	0	0	1	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0039	2909	1	0	0	0	0	1	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0040	2928	1	0	0	1	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0041	2910	1	1	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0042	2887	1	0	0	1	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0043	2887	1	1	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0044	2896	1	1	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0045	2900	1	1	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP2_chr6_43615494_43634264	1/1	t0001	1223	347	75	67	157	12	34	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	t0002	1225	17	17	0	0	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	t0003	1223	6	0	1	1	2	2	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	t0004	1221	3	3	0	0	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	t0005	1223	2	0	0	2	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	t0006	1223	1	1	0	0	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	t0007	1223	1	1	0	0	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	t0008	1223	1	0	0	0	0	1	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	t0009	1223	1	1	0	0	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	t0010	1223	1	0	1	0	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	t0011	1223	1	0	0	0	0	1	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	t0012	1223	1	0	1	0	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP3_chr19_17332553_17347731	0/1	t0001	1094	170	39	24	76	5	25	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	1/0	t0002	1088	162	45	32	65	5	14	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0003	1089	49	2	16	23	3	5	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0004	1082	8	3	1	0	4	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0005	1088	3	3	0	0	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0006	1082	2	2	0	0	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0007	1088	2	0	0	2	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0008	1082	1	1	0	0	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0009	1089	1	0	0	1	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0010	1076	1	0	0	0	1	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0011	1088	1	0	0	1	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0012	1094	1	0	0	1	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0013	1118	1	1	0	0	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0014	1089	1	0	0	0	0	1	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0015	1089	1	0	0	1	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0016	1094	1	1	0	0	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0017	1082	1	0	1	0	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0018	1088	1	1	0	0	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	t0019	1094	1	0	0	0	0	1	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP4_chr10_983434_1024932	0/0	t0001	2753	125	7	30	64	6	18	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0002	2752	91	13	14	50	3	11	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0003	2752	25	24	1	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0004	2753	17	9	1	6	0	1	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0005	2752	17	1	11	0	5	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0006	2752	7	0	0	7	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0007	2752	7	1	5	0	0	1	copy fasta	GTPBP4	chr10	983434	1024932