JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GTPBP4_chr10_983434_1024932	0/0	t0008	2752	6	0	0	6	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0009	2753	5	0	2	3	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0010	2753	5	1	4	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0011	2753	5	5	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0012	2755	4	4	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0013	2754	4	4	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/1	t0014	2752	3	0	1	0	1	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0015	2754	3	3	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0016	2752	3	0	0	3	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0017	2753	3	3	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0018	2753	2	0	0	0	0	2	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0019	2754	2	1	0	1	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0020	2752	2	0	0	2	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0021	2754	2	0	0	1	0	1	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0022	2753	2	0	0	0	0	2	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0023	2752	2	2	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0024	2754	2	2	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0025	2752	1	0	0	1	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0026	2753	1	0	0	1	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0027	2754	1	1	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0028	2753	1	0	0	0	0	1	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0029	2753	1	0	0	0	0	1	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0030	2754	1	0	0	1	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0031	2753	1	0	0	1	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0032	2753	1	1	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0033	2753	1	0	1	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0034	2755	1	1	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0035	2754	1	1	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0036	2753	1	0	0	0	0	1	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0037	2752	1	0	1	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0038	2753	1	1	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0039	2752	1	0	0	1	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0040	2753	1	0	0	1	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0041	2752	1	0	0	0	1	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0042	2752	1	0	1	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0043	2752	1	1	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	1/0	t0044	2752	1	0	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0045	2752	1	1	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0046	2780	1	0	0	1	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0047	2753	1	0	0	0	0	1	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0048	2753	1	0	1	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0049	2752	1	1	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	t0050	2752	1	0	1	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP6_chrX_299759_323796	1/1	t0001	325	68	8	15	35	3	5	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	t0002	325	64	3	14	39	2	6	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	t0003	325	16	8	5	0	1	2	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	t0004	325	4	4	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	t0005	325	3	3	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP8_chr3_112985984_113006969	0/1	t0001	1066	168	13	51	70	10	23	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	1/0	t0002	1067	133	42	14	62	3	11	copy fasta	GTPBP8	chr3	112985984	113006969