JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GTPBP8_chr3_112985984_113006969	0/0	t0003	1068	79	16	1	57	1	4	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	t0004	1066	35	2	2	30	0	1	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	t0005	1066	13	12	1	0	0	0	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	t0006	1068	4	0	0	4	0	0	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	t0007	1066	3	3	0	0	0	0	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	t0008	1064	3	0	0	1	0	2	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	t0009	1066	2	0	0	2	0	0	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	t0010	1067	2	2	0	0	0	0	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	t0011	1067	2	1	1	0	0	0	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	t0012	1067	2	0	2	0	0	0	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	t0013	1067	1	1	0	0	0	0	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	t0014	1067	1	0	0	0	0	1	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	t0015	1066	1	1	0	0	0	0	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	t0016	1067	1	0	0	1	0	0	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	t0017	1066	1	1	0	0	0	0	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	t0018	1066	1	0	0	1	0	0	copy fasta	GTPBP8	chr3	112985984	113006969
GTSE1_chr22_46291870_46335810	1/1	t0001	764	198	90	39	41	4	22	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	t0002	764	1	0	1	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	t0003	764	1	0	0	1	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSF1L_chr20_43721164_43732002	1/1	t0001	393	410	80	72	196	16	44	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	t0002	393	6	5	1	0	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	t0003	393	5	4	1	0	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	t0004	393	1	1	0	0	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1_chr12_54450957_54478602	1/1	t0001	304	263	50	49	117	14	31	copy fasta	GTSF1	chr12	54450957	54478602
GTSF1_chr12_54450957_54478602	0/0	t0002	304	75	31	17	18	0	9	copy fasta	GTSF1	chr12	54450957	54478602
GTSF1_chr12_54450957_54478602	0/0	t0003	304	12	1	4	7	0	0	copy fasta	GTSF1	chr12	54450957	54478602
GTSF1_chr12_54450957_54478602	0/0	t0004	304	3	0	0	3	0	0	copy fasta	GTSF1	chr12	54450957	54478602
GTSF1_chr12_54450957_54478602	0/0	t0005	304	3	3	0	0	0	0	copy fasta	GTSF1	chr12	54450957	54478602
GTSF1_chr12_54450957_54478602	0/0	t0006	304	2	2	0	0	0	0	copy fasta	GTSF1	chr12	54450957	54478602
GTSF1_chr12_54450957_54478602	0/0	t0007	304	1	0	0	1	0	0	copy fasta	GTSF1	chr12	54450957	54478602
GTSF1_chr12_54450957_54478602	0/0	t0008	304	1	1	0	0	0	0	copy fasta	GTSF1	chr12	54450957	54478602
GUCA1ANB_chr6_42150406_42168418	1/1	t0001	241	450	98	86	196	18	50	copy fasta	GUCA1ANB	chr6	42150406	42168418
GUCA1A_chr6_42168364_42185056	1/0	t0001	904	328	30	66	185	16	30	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	t0002	904	23	22	1	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	t0003	904	19	19	0	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/1	t0004	904	14	5	2	0	0	6	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	t0005	904	9	8	1	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	t0006	904	7	7	0	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	t0007	904	4	4	0	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	t0008	904	2	2	0	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	t0009	904	2	2	0	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	t0010	904	1	0	1	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	t0011	904	1	0	0	1	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	t0012	904	1	0	1	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	t0013	904	1	1	0	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1B_chr6_42178284_42199956	0/1	t0001	1668	196	29	33	110	7	16	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0002	1668	89	9	24	37	2	17	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0003	1668	34	0	10	23	1	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	1/0	t0004	1668	33	8	3	14	2	5	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0005	1668	24	24	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956