JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GUCA1B_chr6_42178284_42199956	0/0	t0006	1668	5	5	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0007	1666	3	3	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0008	1668	3	3	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0009	1666	3	3	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0010	1668	3	3	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0011	1668	3	0	0	3	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0012	1668	2	2	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0013	1668	2	0	0	2	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0014	1668	2	2	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0015	1668	2	2	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0016	1668	2	2	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0017	1668	2	2	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0018	1668	1	1	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0019	1668	1	0	0	1	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0020	1668	1	0	0	1	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0021	1668	1	1	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0022	1668	1	0	0	0	1	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0023	1668	1	0	0	0	0	1	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0024	1668	1	1	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0025	1668	1	0	0	0	1	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0026	1668	1	0	0	1	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	t0027	1668	1	0	0	0	0	1	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1C_chr3_108902792_108958879	1/1	t0001	348	374	94	80	142	12	44	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA2A_chr1_42157690_42169745	1/1	t0001	250	410	70	75	201	14	48	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/0	t0002	250	21	21	0	0	0	0	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/0	t0003	250	3	1	2	0	0	0	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/0	t0004	250	1	0	0	1	0	0	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/0	t0005	250	1	0	1	0	0	0	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2B_chr1_42148410_42160820	1/1	t0001	266	405	86	81	179	14	43	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	t0002	266	29	1	0	27	0	1	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	t0003	266	2	0	0	2	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	t0004	266	1	0	1	0	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	t0005	266	1	0	1	0	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	t0006	266	1	0	1	0	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	t0007	266	1	0	0	1	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	t0008	266	1	1	0	0	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	t0009	266	1	0	0	1	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCD1_chr22_24535438_24560138	0/1	t0001	2717	236	29	53	110	13	30	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0002	2716	43	14	7	11	2	9	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	1/0	t0003	2716	24	0	0	21	0	2	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0004	2716	12	4	4	3	1	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0005	2718	11	0	2	6	1	2	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0006	2714	9	8	1	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0007	2716	6	6	0	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0008	2717	5	5	0	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0009	2716	5	5	0	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0010	2717	5	0	3	2	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0011	2717	4	0	0	4	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0012	2717	4	4	0	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0013	2717	4	0	1	3	0	0	copy fasta	GUCD1	chr22	24535438	24560138