JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GUCD1_chr22_24535438_24560138	0/0	t0014	2718	3	0	0	3	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0015	2714	3	2	1	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0016	2715	3	3	0	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0017	2717	2	2	0	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0018	2716	2	0	0	2	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0019	2717	2	0	2	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0020	2716	2	0	0	0	0	2	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0021	2715	2	2	0	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0022	2717	2	0	1	0	0	1	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0023	2716	2	0	1	0	1	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0024	2717	2	2	0	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0025	2717	2	0	0	1	0	1	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0026	2718	2	0	0	2	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0027	2716	1	0	0	0	0	1	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0028	2717	1	0	0	1	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0029	2717	1	1	0	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0030	2717	1	1	0	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0031	2717	1	0	0	1	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0032	2717	1	1	0	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0033	2717	1	0	0	1	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0034	2717	1	0	0	1	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0035	2716	1	0	0	0	0	1	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0036	2714	1	1	0	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0037	2716	1	0	0	0	0	1	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0038	2717	1	1	0	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0039	2716	1	0	0	1	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0040	2716	1	0	0	1	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0041	2717	1	0	0	1	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0042	2716	1	0	0	1	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	t0043	2672	1	1	0	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCY1A1_chr4_155661848_155742059	0/1	t0001	7133	60	2	13	31	5	8	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0002	7128	54	3	14	31	0	6	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0003	7129	43	9	13	6	5	10	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0004	7129	35	17	9	5	3	1	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0005	7129	14	0	0	10	1	3	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0006	7133	8	0	0	8	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0007	7129	7	0	4	0	0	3	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0008	7129	6	6	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0009	7130	5	5	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0010	7129	5	3	2	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0011	7130	4	4	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0012	7129	4	2	0	2	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0013	7129	4	4	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0014	7128	3	0	3	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0015	7133	3	0	0	3	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0016	7130	3	3	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0017	7128	3	0	0	3	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0018	7128	3	0	0	3	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0019	7129	3	3	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0020	7129	2	0	0	0	0	2	copy fasta	GUCY1A1	chr4	155661848	155742059