JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GUCY1A1_chr4_155661848_155742059	0/0	t0021	7129	2	0	1	0	0	1	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0022	7130	2	2	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0023	7130	2	2	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0024	7130	2	2	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0025	7129	2	2	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0026	7129	2	1	1	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0027	7130	2	0	2	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0028	7129	2	2	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0029	7129	2	2	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0030	7129	2	0	0	2	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0031	7133	2	0	0	2	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0032	7132	2	0	1	1	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0033	7129	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0034	7130	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0035	7129	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0036	7129	1	0	1	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0037	7129	1	0	1	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0038	7128	1	0	1	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0039	7128	1	0	0	1	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0040	7128	1	0	0	1	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0041	7129	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0042	7128	1	0	0	1	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0043	7128	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0044	7130	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0045	7130	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0046	7130	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0047	7129	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0048	7129	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0049	7129	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0050	7129	1	0	0	1	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0051	7129	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0052	7129	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0053	7129	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0054	7129	1	0	0	0	0	1	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0055	7129	1	0	0	0	0	1	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0056	7129	1	0	0	1	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0057	7129	1	0	0	1	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0058	7129	1	0	0	0	0	1	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0059	7129	1	0	1	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0060	7133	1	0	0	0	0	1	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0061	7133	1	0	0	1	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0062	7133	1	0	0	0	0	1	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0063	7133	1	0	0	0	0	1	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0064	7133	1	0	0	1	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	1/0	t0065	7133	1	0	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0066	7133	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0067	7180	1	0	0	1	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0068	7129	1	0	1	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	t0069	7129	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A2_chr11_106669019_107023476	0/0	t0001	13952	35	1	6	17	3	8	copy fasta	GUCY1A2	chr11	106669019	107023476