JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GUCY1A2_chr11_106669019_107023476	0/0	t0052	13952	1	1	0	0	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0053	13953	1	0	1	0	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0054	13952	1	0	0	1	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0055	13952	1	1	0	0	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0056	13951	1	1	0	0	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0057	13951	1	0	0	1	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0058	13952	1	0	0	0	0	1	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0059	13951	1	0	0	1	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0060	13951	1	0	0	1	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0061	13952	1	0	0	0	0	1	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0062	13951	1	0	0	1	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0063	13952	1	0	0	1	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0064	13952	1	1	0	0	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0065	13951	1	0	0	1	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0066	13950	1	0	0	0	0	1	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0067	13952	1	0	0	0	1	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0068	13952	1	0	0	1	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0069	13951	1	1	0	0	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0070	13952	1	0	1	0	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0071	13952	1	0	1	0	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	t0072	13951	1	0	0	1	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1B1_chr4_155754021_155812811	1/1	t0001	1523	263	60	56	112	11	22	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	t0002	1523	78	24	16	16	7	15	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	t0003	1523	5	5	0	0	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	t0004	1523	4	0	1	0	0	3	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	t0005	1523	3	0	3	0	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	t0006	1523	3	0	2	0	0	1	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	t0007	1523	2	0	0	2	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	t0008	1523	1	0	0	1	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	t0009	1523	1	1	0	0	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	t0010	1523	1	0	0	0	0	1	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	t0011	1523	1	1	0	0	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	t0012	1523	1	0	0	1	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	t0013	1523	1	1	0	0	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY2C_chr12_14607632_14701599	1/1	t0001	637	230	73	52	67	8	28	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	t0002	637	4	4	0	0	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	t0003	637	1	0	0	1	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	t0004	637	1	1	0	0	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2D_chr17_7997615_8025342	0/1	t0001	367	349	77	48	184	11	28	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	t0002	367	59	1	28	16	6	8	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	t0003	367	8	8	0	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	t0004	367	8	4	0	0	0	4	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	t0005	364	5	4	1	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	t0006	367	2	0	1	0	1	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	1/0	t0007	369	1	0	0	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2F_chrX_109367906_109487086	1/1	t0001	401	169	51	31	66	4	15	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	t0002	401	46	8	6	22	3	7	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	t0003	401	1	0	1	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	t0004	401	1	1	0	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUF1_chr4_44673420_44705928	0/0	t0001	2451	127	22	31	55	6	13	copy fasta	GUF1	chr4	44673420	44705928