JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GUF1_chr4_44673420_44705928	1/0	t0002	2451	90	20	16	52	0	1	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/1	t0003	2451	61	1	9	38	2	10	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0004	2449	53	7	6	35	1	4	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0005	2451	20	17	3	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0006	2451	8	6	2	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0007	2451	6	3	2	0	0	1	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0008	2451	4	4	0	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0009	2451	3	3	0	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0010	2451	3	3	0	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0011	2451	2	2	0	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0012	2451	2	0	1	0	1	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0013	2451	2	0	2	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0014	2451	1	1	0	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0015	2451	1	0	0	0	0	1	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0016	2451	1	0	1	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0017	2451	1	0	1	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0018	2451	1	1	0	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0019	2451	1	0	0	1	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0020	2451	1	1	0	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0021	2451	1	1	0	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	t0022	2449	1	0	0	1	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUK1_chr1_228135279_228153951	1/1	t0001	279	374	86	76	158	16	36	copy fasta	GUK1	chr1	228135279	228153951
GUK1_chr1_228135279_228153951	0/0	t0002	279	34	5	4	22	0	3	copy fasta	GUK1	chr1	228135279	228153951
GUK1_chr1_228135279_228153951	0/0	t0003	279	4	4	0	0	0	0	copy fasta	GUK1	chr1	228135279	228153951
GUK1_chr1_228135279_228153951	0/0	t0004	279	4	0	0	4	0	0	copy fasta	GUK1	chr1	228135279	228153951
GUK1_chr1_228135279_228153951	0/0	t0005	279	3	0	0	0	0	3	copy fasta	GUK1	chr1	228135279	228153951
GUK1_chr1_228135279_228153951	0/0	t0006	279	1	0	0	1	0	0	copy fasta	GUK1	chr1	228135279	228153951
GUK1_chr1_228135279_228153951	0/0	t0007	279	1	1	0	0	0	0	copy fasta	GUK1	chr1	228135279	228153951
GUK1_chr1_228135279_228153951	0/0	t0008	279	1	0	0	1	0	0	copy fasta	GUK1	chr1	228135279	228153951
GULP1_chr2_188286874_188600926	0/1	t0001	2379	62	16	12	16	6	11	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	1/0	t0002	2380	13	4	4	0	2	2	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0003	2380	12	5	1	6	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0004	2380	10	4	4	0	0	2	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0005	2380	7	7	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0006	2380	7	7	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0007	2381	6	6	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0008	2379	6	4	2	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0009	2380	4	1	1	0	0	2	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0010	2379	4	1	3	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0011	2377	4	3	1	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0012	2379	3	0	1	1	0	1	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0013	2380	3	3	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0014	2379	2	0	0	2	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0015	2380	2	2	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0016	2380	1	1	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0017	2380	1	1	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0018	2380	1	1	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0019	2379	1	0	0	1	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0020	2379	1	1	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0021	2379	1	1	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926