JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GULP1_chr2_188286874_188600926	0/0	t0022	2380	1	0	1	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0023	2380	1	1	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0024	2380	1	1	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0025	2379	1	1	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0026	2379	1	1	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0027	2379	1	1	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0028	2381	1	0	1	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0029	2380	1	1	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0030	2380	1	0	1	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0031	2380	1	1	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	t0032	2380	1	1	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GUSB_chr7_65955684_65987213	1/1	t0001	244	377	83	77	159	16	40	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	t0002	244	37	5	2	30	0	0	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	t0003	244	3	0	3	0	0	0	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	t0004	244	1	0	0	1	0	0	copy fasta	GUSB	chr7	65955684	65987213
GVQW3_chr11_76376323_76413132	0/1	t0001	4882	77	5	17	41	1	12	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0002	4875	74	12	12	40	4	6	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0003	4883	41	10	12	11	2	6	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0004	4882	19	0	2	11	5	1	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0005	4876	18	7	1	10	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0006	4883	12	0	0	11	1	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0007	4880	9	1	0	8	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	1/0	t0008	4881	8	6	1	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0009	4883	8	6	1	0	0	1	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0010	4880	8	2	3	2	0	1	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0011	4881	7	0	0	7	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0012	4883	5	0	3	2	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0013	4883	5	0	0	4	0	1	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0014	4883	4	0	0	4	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0015	4882	3	0	0	3	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0016	4884	3	0	0	3	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0017	4875	3	0	0	3	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0018	4876	3	0	0	2	0	1	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0019	4882	3	3	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0020	4881	2	2	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0021	4875	2	0	0	0	0	2	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0022	4875	2	0	0	0	1	1	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0023	4875	2	0	0	0	0	2	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0024	4882	2	2	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0025	4881	2	2	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0026	4883	2	0	0	0	0	2	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0027	4880	2	0	0	2	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0028	4865	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0029	4875	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0030	4865	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0031	4882	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0032	4881	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0033	4884	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0034	4876	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0035	4883	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132