JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GVQW3_chr11_76376323_76413132	0/0	t0036	4904	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0037	4883	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0038	4882	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0039	4882	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0040	4875	1	0	1	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0041	4874	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0042	4882	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0043	4876	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0044	4884	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0045	4882	1	0	1	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0046	4883	1	0	0	0	0	1	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0047	4882	1	0	1	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0048	4883	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0049	4884	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0050	4882	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0051	4883	1	0	1	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0052	4879	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0053	4882	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0054	4882	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0055	4875	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0056	4882	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0057	4884	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0058	4875	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0059	4881	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0060	4884	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0061	4882	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0062	4880	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0063	4884	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0064	4881	1	0	0	0	0	1	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0065	4877	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0066	4883	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0067	4881	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0068	4881	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0069	4875	1	0	1	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0070	4882	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0071	4876	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0072	4882	1	0	0	1	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0073	4882	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0074	4881	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0075	4880	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0076	4875	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0077	4881	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0078	4875	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0079	4875	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0080	4883	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0081	4877	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0082	4882	1	1	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	t0083	4875	1	0	1	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GXYLT1_chr12_42076845_42149874	0/0	t0001	6171	71	14	14	39	3	1	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	1/1	t0002	6170	65	5	15	35	4	4	copy fasta	GXYLT1	chr12	42076845	42149874