JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GXYLT1_chr12_42076845_42149874	0/0	t0003	6171	55	5	9	35	1	5	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0004	6171	54	7	13	29	2	3	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0005	6171	20	1	3	15	0	1	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0006	6168	14	0	3	11	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0007	6182	12	9	2	0	0	1	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0008	6185	10	0	6	1	2	1	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0009	6171	8	8	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0010	6168	6	0	0	2	0	4	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0011	6171	6	6	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0012	6182	6	0	0	6	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0013	6170	5	0	0	0	0	5	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0014	6172	4	4	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0015	6171	4	0	1	0	1	2	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0016	6172	3	3	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0017	6170	3	3	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0018	6171	3	3	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0019	6171	2	0	0	0	0	2	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0020	6171	2	2	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0021	6170	2	2	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0022	6170	2	2	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0023	6171	2	2	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0024	6170	2	2	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0025	6171	2	0	0	2	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0026	6170	2	1	1	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0027	6170	2	2	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0028	6170	2	2	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0029	6171	2	0	0	2	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0030	6171	1	0	0	1	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0031	6171	1	1	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0032	6171	1	0	0	1	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0033	6171	1	0	0	1	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0034	6171	1	1	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0035	6171	1	0	1	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0036	6171	1	0	0	1	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0037	6171	1	1	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0038	6171	1	0	1	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0039	6171	1	0	0	0	1	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0040	6171	1	0	1	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0041	6170	1	0	0	0	0	1	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0042	6171	1	0	0	1	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0043	6171	1	1	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0044	6171	1	0	0	1	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0045	6170	1	0	1	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0046	6171	1	0	0	1	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0047	6171	1	0	1	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0048	6171	1	0	0	1	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0049	6171	1	0	0	0	0	1	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0050	6171	1	0	0	0	0	1	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0051	6182	1	1	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0052	6182	1	1	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874