JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GXYLT1_chr12_42076845_42149874	0/0	t0053	6182	1	1	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0054	6182	1	0	0	1	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0055	6182	1	1	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	t0056	6171	1	1	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT2_chr3_72883046_72981915	0/1	t0001	1943	149	50	36	42	4	16	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	1/0	t0002	1945	61	4	15	29	2	10	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0003	1947	13	13	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0004	1942	11	0	10	0	0	1	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0005	1943	8	2	0	6	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0006	1946	8	4	1	2	0	1	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0007	1944	7	0	1	4	0	2	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0008	1943	7	6	1	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0009	1942	4	2	1	1	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0010	1943	2	1	1	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0011	1942	2	0	0	1	0	1	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0012	1943	2	0	0	1	0	1	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0013	1942	2	1	0	1	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0014	1945	2	2	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0015	1945	2	2	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0016	1946	1	0	1	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0017	1943	1	0	1	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0018	1945	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0019	1947	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0020	1946	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0021	1947	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0022	1946	1	0	0	1	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0023	1945	1	0	0	0	0	1	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0024	1945	1	0	0	0	0	1	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0025	1942	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0026	1946	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0027	1943	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0028	1947	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0029	1942	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0030	1947	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	t0031	1947	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GYG1_chr3_148986540_149036775	0/0	t0001	4938	116	24	15	66	5	6	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0002	4947	89	1	24	55	3	6	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	1/1	t0003	4944	87	10	11	39	5	20	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0004	4944	12	11	1	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0005	4944	9	8	0	0	1	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0006	4938	7	0	1	0	0	6	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0007	4946	6	0	2	4	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0008	4944	6	1	0	4	0	1	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0009	4943	5	1	0	2	1	1	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0010	4945	5	0	1	4	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0011	4944	5	5	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0012	4948	4	4	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0013	4945	4	4	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0014	4944	3	0	2	0	0	1	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0015	4947	3	3	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775