JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GYG1_chr3_148986540_149036775	0/0	t0016	4945	3	3	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0017	4948	3	0	1	2	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0018	4938	3	0	1	0	1	1	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0019	4947	3	0	0	0	0	3	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0020	4944	2	2	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0021	4947	2	0	0	2	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0022	4945	2	1	1	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0023	4947	2	2	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0024	4947	2	0	2	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0025	4938	2	2	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0026	4938	2	0	0	0	2	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0027	4947	1	0	0	1	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0028	4943	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0029	4933	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0030	4943	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0031	4944	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0032	4944	1	0	1	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0033	4944	1	0	0	0	0	1	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0034	4944	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0035	4945	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0036	4948	1	0	1	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0037	4944	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0038	4945	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0039	4944	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0040	4944	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0041	4944	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0042	4943	1	0	1	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0043	4947	1	0	0	1	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0044	4938	1	0	0	1	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0045	4938	1	0	0	1	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0046	4938	1	0	1	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0047	4938	1	0	0	1	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0048	4938	1	0	0	1	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0049	4943	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0050	4943	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0051	4943	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0052	4943	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	t0053	4944	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG2_chrX_2823930_2887818	0/0	t0001	1780	88	9	23	34	5	17	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/1	t0002	1780	72	15	12	37	5	2	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	t0003	1780	48	11	5	30	0	2	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	1/0	t0004	1780	45	3	7	26	0	8	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	t0005	1780	24	21	1	0	0	2	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	t0006	1780	11	9	2	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	t0007	1780	9	7	1	0	1	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	t0008	1780	3	2	0	0	0	1	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	t0009	1780	2	0	2	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	t0010	1780	2	0	0	2	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	t0011	1780	2	0	0	0	0	2	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	t0012	1780	2	2	0	0	0	0	copy fasta	GYG2	chrX	2823930	2887818