JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GYG2_chrX_2823930_2887818	0/0	t0013	1779	1	0	0	1	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	t0014	1780	1	0	0	1	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	t0015	1780	1	1	0	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	t0016	1780	1	0	0	1	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	t0017	1780	1	0	0	1	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	t0018	1778	1	0	0	1	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	t0019	1781	1	0	0	1	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	t0020	1780	1	0	1	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYPA_chr4_144104303_144145718	0/1	t0001	2163	144	11	21	85	8	18	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0002	2164	106	0	21	69	6	10	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0003	2164	32	1	8	5	3	15	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0004	2164	25	9	6	7	0	3	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0005	2176	22	7	7	6	1	1	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	1/0	t0006	2175	20	19	0	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0007	2174	19	18	1	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0008	2174	19	8	1	10	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0009	2173	7	7	0	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0010	2174	6	5	1	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0011	2163	5	4	1	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0012	2163	3	0	3	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0013	2163	3	0	0	3	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0014	2176	3	3	0	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0015	2164	2	0	2	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0016	2163	2	0	1	0	0	1	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0017	2164	2	0	0	2	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0018	2174	2	2	0	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0019	2163	1	0	0	1	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0020	2173	1	1	0	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0021	2164	1	0	1	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0022	2164	1	0	0	1	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0023	2164	1	1	0	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0024	2173	1	1	0	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0025	2176	1	0	0	1	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0026	2175	1	1	0	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0027	2174	1	0	1	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	t0028	2164	1	0	1	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPB_chr4_143991104_144024380	1/1	t0001	289	422	75	80	205	16	44	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	t0002	289	4	4	0	0	0	0	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	t0003	289	4	4	0	0	0	0	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	t0004	289	3	0	2	1	0	0	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	t0005	289	1	1	0	0	0	0	copy fasta	GYPB	chr4	143991104	144024380
GYPC_chr2_126651158_126701667	1/1	t0001	632	267	51	42	114	15	43	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	t0002	632	131	27	30	64	3	7	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	t0003	632	9	8	1	0	0	0	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	t0004	632	4	4	0	0	0	0	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	t0005	632	2	0	2	0	0	0	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	t0006	632	1	0	1	0	0	0	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	t0007	632	1	0	1	0	0	0	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	t0008	632	1	0	1	0	0	0	copy fasta	GYPC	chr2	126651158	126701667
GYPE_chr4_143865864_143910559	0/1	t0001	1451	210	65	36	82	7	19	copy fasta	GYPE	chr4	143865864	143910559